Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHYK19.

ACC No: AB179958

Dated: 2004-08-20 | Length: 1527 | CRC: -733140360

                !!NA_SEQUENCE 1.0
ID   AB179958   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB179958;
XX
SV   AB179958.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHYK19.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHYK19"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6G1"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20372.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMIVQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDIALVQEHFGNIRMDLLGEDELDSNEIRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPININEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 491 A; 329 C; 357 G; 350 T; 0 other;

AB179958  Length: 1527  August 31, 2004 08:43  Type: N  Check: 3035  ..

       1  accgatggaa tatctcggca tttcatgagt gagtttggag ctcttgaggc
      51  cgttcaccat caaaacacta gcgacatgag taaatttctc aagcttaagg
     101  gcaaatggaa taaaacacta atcacgagag atgtgttggt gctttgtgga
     151  gttcttggag gtggattgtg gatgattgtt cagcacttgc ggtcaaagat
     201  ttccgaacct gtaacccacg aagcgaaagg caagaggcaa aggcagaaac
     251  taaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga
     301  gatgatgata ccatcgaaca tttcttcggt gatgcctaca caaagaaagg
     351  gaagagcaag ggtaggacgc gtggtatcgg acacaaaaac aggaagttca
     401  tcaacatgta tggatttgat cctgaagact tctctgcagt tcgtttcgtg
     451  gatccactta caggagcgac gttggacgac aaccctttca cagacatcgc
     501  tcttgtgcaa gagcactttg gtaatataag aatggacttg ctcggggagg
     551  atgagctgga ctcaaatgaa atacgtatga ataaaacaat tcaagcgtac
     601  tacatgaaca ataaaacagg caaggctttg aaggtggacc tgacaccaca
     651  catacctctc aaggtgtgtg atcttcacgc aaccattgct ggattcccag
     701  agcgagaaaa tgaactgagg cagactggaa aggctcagcc cattaacata
     751  aacgaagtgc caagagctaa taatgaactc gttccagtgg accacgagag
     801  taactccatg ttcagagggt tgcgtgacta caacccaata tcaaacaaca
     851  tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga
     901  gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa
     951  taacggtgaa ctcgtaataa aatcacgaca tggtgagttc gtgatcaaaa
    1001  acacaactca gctacatttg ctaccgattc cagacagaga tcttctgcta
    1051  atccggttac caaaggacgt cccacccttt ccacagaaat tgggtttcag
    1101  gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc aatttccaaa
    1151  ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg
    1201  gaaaacagtc agttttggaa acactggatt agcacaaaag acggccaatg
    1251  cggaagtcca atggtgagca cgaaagacgg gaaaatactt gggttacata
    1301  gcctagcaaa cttccagaac tccatcaatt acttcgctgc tttcccagat
    1351  gattttgccg agaagtatct tcataccatt gaagcacatg agtgggtcaa
    1401  gcattggaaa tacaacacta gtgccattag ttggggctct ttgaacatac
    1451  aagcatcgca accgtcaggc ttgtttaaag taagcaagct aatctcagac
    1501  ctcgacagca cggcagtcta cgcacaa