Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHZC1.

ACC No: AB179961

Dated: 2004-08-20 | Length: 1527 | CRC: 1310193576

                !!NA_SEQUENCE 1.0
ID   AB179961   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB179961;
XX
SV   AB179961.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CHZC1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHZC1"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6F8"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20375.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMIIQHLRSKISEPVTHEAKSKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQEHFGNIRMNLLGEDDLDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNKLVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSFNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 497 A; 335 C; 349 G; 346 T; 0 other;

AB179961  Length: 1527  August 31, 2004 08:43  Type: N  Check: 8624  ..

       1  accgatggaa tatctcggca tttcatgagt gagtttggag ctcttgaggc
      51  agtccatcat caaaacacca gtgacatgag caaattcctt aagcttaagg
     101  gcaaatggaa caaaacacta atcacgcgag atgtgttggt gctttgtgga
     151  gttcttggag gtggattgtg gatgattatt cagcacctgc gatcaaagat
     201  ttccgaaccc gtaacccacg aagcgaaaag caagaggcaa agacagaaac
     251  taaagtttcg caatgcccga gataacaaga tgggtagaga agtgtacgga
     301  gacgatgata ccatagagca tttctttggt gacgcctaca caaagaaagg
     351  gaagagcaaa ggtaggacac gtggtctcgg acacaaaaac aggaagttca
     401  tcaatatgta tgggtttgat cctgaagatt tctctgcagt tcgtttcgtg
     451  gatccactca caggagcgac gttggatgac aacccgttca cagacatcac
     501  ccttgtgcaa gagcactttg gtaacataag aatgaacttg ctcggggagg
     551  atgacctgga tccaaatgaa atacgtgtga ataagacaat tcaggcctat
     601  tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca
     651  catacctctc aaggtgtgtg atcttcacgc aaccattgct ggattcccag
     701  agcgagaaaa cgaactgagg cagactggaa aggctcagcc cattaacata
     751  gacgaagtgc caagagctaa taataaactc gtcccagtgg atcacgagag
     801  taactccatg ttcagaggat tgcgtgacta caacccaata tcaaacaaca
     851  tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga
     901  gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa
     951  taacggcgaa ctcataataa aatcacgaca tggtgagttc gtgatcaaaa
    1001  acacaactca gctacatttg ctaccgattc cagacagaga tctcctgtta
    1051  atccggttac caaaggacgt cccacccttt ccacagaaat tgggtttcag
    1101  gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc aatttccaaa
    1151  ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg
    1201  gaaaacagtc agttttggaa acactggatt agcacaaaag atggccaatg
    1251  cggaagtcca atggtgagca cgaaagacgg gaaaatactt gggttacata
    1301  gcctagcaaa cttccagaac tccatcaatt actttgctgc tttcccagat
    1351  gattttgccg agaagtacct tcataccatt gaagcacacg agtgggtcaa
    1401  gcattggaaa tacaacacta gtgccattag ttggggctct tttaatatac
    1451  aagcatcaca accgtcaggc ttgttcaaag taagcaagct aatctcagac
    1501  ctcgacagca cggcagtcta cgcacaa