Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: HJ1S.

ACC No: AB179972

Dated: 2004-08-20 | Length: 1527 | CRC: 190683365

                !!NA_SEQUENCE 1.0
ID   AB179972   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB179972;
XX
SV   AB179972.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: HJ1S.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="HJ1S"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6E7"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20386.1"
FT                   /translation="TDGISRHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMIIQHLRSKTSEPVTHEAKSKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFIHMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQEHFGNIRMDLLGEDELDSNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVSVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 493 A; 337 C; 355 G; 342 T; 0 other;

AB179972  Length: 1527  August 31, 2004 08:43  Type: N  Check: 8300  ..

       1  accgatggaa tatctcggca tttcatgagt gagtttggag ctcttgaggc
      51  agttcaccat caaaacacca gtgacatgag caaattcctc aagcttaagg
     101  gcaaatggaa caaaacgcta atcacgcgag atgtattggt gctttgtgga
     151  gttcttggag gtggattgtg gatgattatt cagcacctgc ggtcaaagac
     201  atccgaaccc gtaacccacg aagcgaaaag caagaggcaa agacagaaac
     251  taaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga
     301  gacgatgata ccatagagca tttctttggt gatgcctaca caaagaaagg
     351  gaagagcaag ggcagaacac gtggtatcgg acacaaaaac aggaagttca
     401  tccacatgta tgggtttgat cctgaggatt tctctgcagt tcgtttcgtg
     451  gatccactca caggagcgac gttggatgac aacccgttca cagacatcac
     501  ccttgtgcaa gagcacttcg gcaacataag aatggactta ctcggggagg
     551  atgagctgga ctcaaatgaa atacgtgtga ataagactat tcaagcctac
     601  tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca
     651  catacctctt aaggtgtgtg atcttcacgc aaccattgct ggattcccag
     701  agcgagaaaa cgaattgagg cagactggaa aggctcagcc cattaacata
     751  gacgaagtgc caagagctaa taatgaactc gtctcagtgg accacgagag
     801  taactccatg ttcagagggt tgcgtgacta caacccaata tcaaacaaca
     851  tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga
     901  gtcggtttcg gaccactcat attaacgaat cgacacctct ttgagcggaa
     951  taacggcgaa ctcataataa aatcgcgaca tggtgagttc gtgatcaaaa
    1001  acacaactca gctacatttg ctaccgattc cagacagaga tcttctgcta
    1051  atccggttac caaaggacgt cccacccttt ccacagaaat tgggtttcag
    1101  gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc aatttccaaa
    1151  ccaagagcat aacgagtata gtctctgaga ctagtacaat aatgccagtg
    1201  gaaaacagtc agttttggaa acactggatt agcacaaaag acggccaatg
    1251  cggaagtcca atggtgagca cgaaagacgg gaaaatactt gggttacata
    1301  gcctagcaaa cttccagaac tccatcaatt actttgctgc tttcccagat
    1351  gattttgccg agaagtacct tcataccatt gaagcacacg agtgggtcaa
    1401  gcattggaaa tataacacta gtgccattag ttggggctct ttgaatatac
    1451  aagcatcaca accgtcaggc ttgttcaaag taagcaagct aatctcagac
    1501  ctcgacagca cggcagtcta cgcacaa