Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: NPL3.

ACC No: AB179978

Dated: 2004-08-20 | Length: 1527 | CRC: -1285931437

                !!NA_SEQUENCE 1.0
ID   AB179978   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB179978;
XX
SV   AB179978.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: NPL3.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NPL3"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6E1"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20392.1"
FT                   /translation="TDGISQHFMSEFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT                   TDITLVQEHFGNIRMDLLGEDELDSNGIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREHELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFSEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 482 A; 341 C; 362 G; 342 T; 0 other;

AB179978  Length: 1527  August 31, 2004 08:43  Type: N  Check: 9380  ..

       1  accgatggaa tatctcagca tttcatgagt gagtttggag ctcttgaggc
      51  agtccaccat caaaacacca gtgacatgag caaattcctc aagcttaagg
     101  gcaaatggaa caaaacgcta atcacgcgag atgtgttggt gctttgtgga
     151  gttcttggag gtggattgtg gatggttatt cagcacctgc ggtcaaagat
     201  ctccgaaccc gtaacccacg aagcgaaagg taagaggcaa agacagaaac
     251  ttaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga
     301  gatgacgata ccatagagca tttctttggt gatgcctaca caaagaaagg
     351  gaagagcaag ggcaggacac gtggtctcgg acacaaaaac aggaagttca
     401  tcaacatgta tgggtttgat cctgaagatt tctctgcagt tcgtttcgtg
     451  gatccactca caggagcaac gttggatgac aacccgctca cagacatcac
     501  ccttgtgcaa gagcactttg gtaacataag aatggacttg ctcggggagg
     551  atgagctgga ttcaaatgga atacgtgtga ataagacgat tcaggcctac
     601  tacatgaaca ataaaacagg caaggccttg aaggtggatt tgacaccaca
     651  catacctctt aaggtgtgtg atcttcacgc aaccattgct ggattcccag
     701  agcgagaaca cgaattgagg cagactggga aggctcagcc cattaacata
     751  gacgaagtgc caagagccaa taatgaactc gtcccagtgg accacgagag
     801  taactccatg ttcagagggt tgcgtgacta caacccaata tcaaacaaca
     851  tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga
     901  gtcggctttg gaccactcat attaacgaac cgacacctct ttgaacggaa
     951  taacggtgaa ctcgtaataa aatcacgaca cggtgagttc gtgattaaaa
    1001  acacaactca gctacacctg ttaccgattc cagacagaga tcttctgcta
    1051  atccggctac caaaggacat cccacccttt ccacagaaat tgggtttcag
    1101  gcaacctgag aagggtgaac ggatttgcat ggtggggtcc aatttccaaa
    1151  ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg
    1201  gagaacagtc agttttggaa acactggatt agcactaaag acggccaatg
    1251  cggaagtcca atggtgagca cgaaagatgg gaaaatactc gggttacata
    1301  gcctagcgaa cttccagaac tccatcaatt actttgctgc tttcccagat
    1351  gatttttccg agaagtatct tcacaccatt gaagcacatg aatgggtcaa
    1401  gcattggaag tataacacta gcgccatcag ttggggctct ttgaatatac
    1451  aagcatcgca accatcaggc ttgtttaaag taagcaagct aatctcagac
    1501  ctcgacagca cggcagtcta cgcacaa