Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: ST19J.

ACC No: AB179981

Dated: 2004-08-20 | Length: 1527 | CRC: -581041953

                !!NA_SEQUENCE 1.0
ID   AB179981   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB179981;
XX
SV   AB179981.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: ST19J.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ST19J"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6D8"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20395.1"
FT                   /translation="TDGISRHFMSGFGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDSKMGREVYGEDDT
FT                   IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDIALVQEHFGNIRMDLLGEDELDSNKIRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDNFAEKYLH
FT                   TIEAHEWVKHWKYNTNAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 490 A; 338 C; 358 G; 341 T; 0 other;

AB179981  Length: 1527  August 31, 2004 08:43  Type: N  Check: 9732  ..

       1  accgatggaa tatctcggca tttcatgagt gggtttggag ctcttgaggc
      51  agttcaccat caaaacacca gcgacatgag taaattcctc aagcttaagg
     101  gcaaatggaa caaaacgcta atcacgcgag atgtgctggt gctttgtgga
     151  gtccttggag gtggattgtg gatggttatt cagcatctgc ggtcaaagat
     201  ttccgaacct gtaacccacg aagcgaaagg caagaggcaa agacagaaac
     251  taaagtttcg caatgcccga gacagcaaga tgggcagaga agtgtacgga
     301  gaggatgata ccatagaaca tttcttcggt gatgcctaca caaagaaagg
     351  gaagagcaag ggtaggacac gtggtctcgg acacaagaat agaaagttca
     401  tcaacatgta cgggtttgat cctgaagatt tctctgcagt tcgtttcgtg
     451  gatccactca caggagccac gttggacgac aacccattca cagacatcgc
     501  tcttgtgcaa gagcactttg gtaacataag aatggactta ctcggggagg
     551  atgagctgga ctcaaataag atacgcatga ataagacaat tcaggcctac
     601  tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccgca
     651  catacctctc aaggtgtgtg atcttcatgc aaccattgct ggattcccag
     701  agcgagagaa cgaactgagg cagactggaa aggctcagcc cattaacata
     751  gacgaagtac caagagctaa taatgaactc gtcccagtgg accatgagag
     801  taactccatg ttcagagggt tgcgtgacta caacccaata tcaaacaaca
     851  tctgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga
     901  gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa
     951  taacggtgaa ctcataataa aatcacgaca tggcgagttt gtgattaaaa
    1001  acacaactca gctacatttg ctaccgattc cagacagaga tcttctgcta
    1051  atccggttac cgaaggacgt cccacccttt ccacagaaat tgggtttcag
    1101  gcaacctgag aaaggtgaac gaatttgcat ggtggggtcc aatttccaaa
    1151  ccaagagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg
    1201  gaaaacagtc agttttggaa acactggatt agcacgaaag acggccaatg
    1251  cggaagtcca atggtgagca cgaaagacgg gaaaatactt ggattacaca
    1301  gtctagcaaa cttccagaac tccatcaatt actttgctgc tttcccagat
    1351  aattttgccg agaagtatct tcataccatt gaagcacacg agtgggtcaa
    1401  gcattggaaa tacaacacta atgccatcag ttggggctct ttgaatatac
    1451  aagcatcgca accgtcaggc ttgtttaaag taagcaagct aatctcagac
    1501  ctcgacagca cagcagtcta cgcacaa