Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds.

ACC No: AB179996

Dated: 2004-08-20 | Length: 1076 | CRC: -1836002294

                !!NA_SEQUENCE 1.0
ID   AB179996   standard; genomic RNA; VRL; 1076 BP.
XX
AC   AB179996;
XX
SV   AB179996.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1076
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1076
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHHH30"
FT   CDS             <1. .867
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6C3"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20410.1"
FT                   /translation="AGETLDAGLTDEQKQAEKEKKEKEKAEKERERQKQLALKKGKDVA
FT                   QEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEQRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 1076 BP; 336 A; 215 C; 283 G; 242 T; 0 other;

 AB179996  Length: 1076  August 31, 2004 08:43  Type: N  Check: 703  ..

       1  gcaggtgaaa cgcttgatgc aggtttgaca gacgagcaaa agcaggcgga
      51  gaaagaaaag aaggagaaag agaaggcaga gaaggaacga gagaggcaga
     101  agcagttggc actcaagaaa ggcaaggatg tcgcacaaga agagggaaaa
     151  cgcgacaagg aagtaaacgc cggaacctct ggaactttca gcgtacccag
     201  acttaagagt ctgacaagca agatgcgcgt gccaagatac gagcaaagag
     251  tggccctaaa cctcgatcat ctaatcctat acacgccgga gcagacggat
     301  ctatccaaca cacgttcaac gcgaaagcag tttgacacat ggtttgaagg
     351  tgtaatggct gattacgaac tgacggagga caaaatgcaa atcattctca
     401  atggtttaat ggtctggtgc attgagaacg gaacctcccc gaacataaac
     451  ggaatgtggg tgatgatgga cggcgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt tgctgaagcg tacattgaaa agcgtaacca ggaccgacca
     601  tacatgccac gatatggtct tcagcgcaac ttaaccgaca tgagcttagc
     651  tcgatacgcg tttgatttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaagc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aacaatttgt tcggcttgga tggaaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gttatgaagt tgtatgctgg tagactataa gtatttaagt
     901  ttactcgtta gtattctcgc ttatgggaaa tatgtaagtt tgttaaagca
     951  gccagtgtga ctttgtcacg tgtgttgttg ttactttcta tattttcgcc
    1001  gaacatttta ttggtgttag cgcatgtggt gaggatcatc ctcgattgcc
    1051  ttaacatttg ataggatgca agggac