Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds.

ACC No: AB180001

Dated: 2004-08-20 | Length: 1076 | CRC: -1037091732

                !!NA_SEQUENCE 1.0
ID   AB180001   standard; genomic RNA; VRL; 1076 BP.
XX
AC   AB180001;
XX
SV   AB180001.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1076
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1076
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHL13"
FT   CDS             <1. .867
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6B8"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20415.1"
FT                   /translation="AGETLDAGLTEEQKQAEKERKERERSEKERERQKQLALKKGKNAA
FT                   QEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKFEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 1076 BP; 336 A; 210 C; 277 G; 253 T; 0 other;

AB180001  Length: 1076  August 31, 2004 08:43  Type: N  Check: 5188  ..

       1  gcaggtgaga cgcttgatgc cggtctaaca gaagagcaga agcaggctga
      51  aaaggagaga aaggagagag agagatcaga gaaagagcga gaaaggcaaa
     101  aacagctagc gctcaagaaa ggcaaaaacg cagcacaaga agagggcgaa
     151  cgtgacaatg aagtaaacgc cggaacttcc ggaactttta gcgtgcctag
     201  actcaaaagt cttacaagca aaatgcgtgt gccgaagttt gagaaaagag
     251  ttgctctcaa cctcgatcat ttgatcttgt acacgccgga gcagacagat
     301  ttatccaaca cgcgttcaac gcggaagcag tttgacactt ggtttgaagg
     351  cgtcatggct gactatgagc taacggagga taaaatgcaa ataattctca
     401  atggtttaat ggtctggtgc attgagaatg gaacctcccc aaacataaac
     451  ggaatgtggg tgatgatgga cggagatgat caggtggaat tcccgatcaa
     501  gccgctcatt gaccacgcca aacccacatt taggcaaata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca ggaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgttacgcg tttgacttct acgaaatgac ttctagaact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggtaacgtc ggcacaacgg tagagaacac
     801  ggaaaggcat acgaccgaag acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gttatgaagt tgtatgctag tagactataa gtagttaagt
     901  ttactcgtta gtattctcgc ttatgggaaa tatgtaagtt tgttaaagca
     951  gccagtgtga cttcgtcatg tgtgttgttg ttactttcta tattttcgcc
    1001  gaacttttta ttggtgttag cgcatgtggt gagatactat ctcgattgcc
    1051  ttaacatttg ataggaagca agggac