Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds.

ACC No: AB180006

Dated: 2004-08-20 | Length: 1076 | CRC: 2076452925

                !!NA_SEQUENCE 1.0
ID   AB180006   standard; genomic RNA; VRL; 1076 BP.
XX
AC   AB180006;
XX
SV   AB180006.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1076
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1076
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CHN5"
FT   CDS             <1. .867
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L6B3"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20420.1"
FT                   /translation="AGETLDAVPTDEQKQAEKEKKDREKAEKEREKQKQLALKKGKDVA
FT                   QEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIVLNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 1076 BP; 331 A; 209 C; 287 G; 249 T; 0 other;

AB180006  Length: 1076  August 31, 2004 08:43  Type: N  Check: 4640  ..

       1  gcaggtgaga cgcttgatgc agttccgaca gacgagcaaa agcaggcgga
      51  gaaggagaag aaggatagag agaaggcaga aaaggaacga gagaagcaga
     101  agcagttggc actcaagaaa ggcaaggatg ttgcgcaaga agagggaaaa
     151  cgcgacaagg aggtaaacgc tggaacctct ggaactttca gtgtacccag
     201  acttaagagt ctgacaagca agatgcgcgt gccaagatat gagaaaagag
     251  tggctctaaa cctcgatcat ctaatcctat acacaccaga gcagacggat
     301  ctgtccaaca cgcgttcaac gcgaaagcag tttgacacat ggtttgaagg
     351  tgtaatggct gattacgaac tgacggagga taaaatgcaa atcgttctca
     401  atggtttaat ggtctggtgc attgagaacg gaacctcccc gaacataaac
     451  ggaatgtggg tgatgatgga cggcgatgat caggtggaat tcccgatcaa
     501  gccgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgatacgcg tttgatttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaagc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aacaatttgt tcggcttgga tggaaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gttatgaagt tgtatgctgg tagactataa gtatttaagt
     901  ttactcgtta gtattctcgc ttatgggaaa tatgtaagtt tgttaaagca
     951  gccagtgtga ctttgtcatg tgtgttgttg ttactttcta tattttcgcc
    1001  gaacatttta ttggtgttag cgcatgtggt gaggatcgtc ctcgattgcc
    1051  ttaacatttg ataggatgcc agggac