Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds.

ACC No: AB180038

Dated: 2004-08-20 | Length: 1076 | CRC: 1948111465

                !!NA_SEQUENCE 1.0
ID   AB180038   standard; genomic RNA; VRL; 1076 BP.
XX
AC   AB180038;
XX
SV   AB180038.1
XX
DT   25-MAY-2004 (Rel. 79, Created)
DT   20-AUG-2004 (Rel. 80, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1076
RA   Ohshima K.;
RT   ;
RL   Submitted (18-MAY-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tan Z., Wada Y., Chen J., Ohshima K.;
RT   "Inter- and intralineage recombinants are common in natural populations of
RT   Turnip mosaic virus";
RL   J. Gen. Virol. 85:2683-2696(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1076
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="OD14J"
FT   CDS             <1. .867
FT                   /codon_start=1
FT                   /db_xref="UniProt/TrEMBL:Q6L681"
FT                   /product="polyprotein"
FT                   /protein_id="BAD20452.1"
FT                   /translation="AGETLDAVLTEEQKQAEKERKERERSDKERERQRQLALKKGKNAA
FT                   QEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 1076 BP; 329 A; 210 C; 281 G; 256 T; 0 other;

AB180038  Length: 1076  August 31, 2004 08:43  Type: N  Check: 8383  ..

       1  gcaggtgaga cgcttgatgc cgttctaaca gaagagcaga agcaggctga
      51  aaaggagaga aaggagagag agagatcaga taaagagcga gaaaggcaaa
     101  gacagctagc gcttaagaaa ggcaaaaacg cagcacaaga agagggcgaa
     151  cgtgacaatg aagtaaacgc cggaacttcc ggaactttta gcgtgcctag
     201  actcaaaagt cttacaagca aaatgcgtgt gccgaagtat gagaaaagag
     251  ttgctctcaa cctcgatcat ttgatcttat acacgccgga gcagacagat
     301  ttatccaaca cgcgttcaac gcggaagcag tttgacactt ggtttgaagg
     351  tgtcatggct gactatgagc taacggagga taaaatgcaa ataattctca
     401  atggtttaat ggtctggtgc attgagaatg gaacctcccc gaacataaac
     451  ggaatgtggg tgatgatgga cggcgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgatacgcg tttgatttct atgaaatgac ttctaggact ccaatacgtg
     701  cgagagaagc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aacaatttgt tcggcttgga tggaaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgagg acgttaatcg gaacatgcat aacttgcttg
     851  gcgttaaggg gttatgaagt tgtatgctgg tagactataa gtatttaagt
     901  ttactcgtta gtattctcgc ttatgggaaa tatgtaagtt tgttaaagca
     951  gccagtgtgg ctacgtcatg tgtgttgttg ttactttcta tattctcgcc
    1001  gaacatttta ttggtgttag cgcatgtggt gaggttcgtc ctcgattgcc
    1051  ttaacatttg ataggatgcc cgggac