Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: AllA.

ACC No: AB188861

Dated: 2004-12-03 | Length: 1086 | CRC: 340673394

                !!NA_SEQUENCE 1.0
ID   AB188861   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188861;
XX
SV   AB188861.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: AllA.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="AllA"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689Y5"
FT                   /db_xref="UniProt/TrEMBL:Q689Y5"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38680.1"
FT                   /translation="MAAVTFAAAITNTITNKPASTGMVQFGSFPPTPLRSTTIATVANP
FT                   VAQPKLYTVQFGSLDPVLVKGGAGSFAKATRQQPNVEIDVSLSEAAALEVAKPEPNAVL
FT                   RMYEEDNRRRAIFLDLESKLNRRPYGIADNEKIIMTARGVSKIVPRSTRAMKHKRARER
FT                   RRAQQPILLKYEPILNELSIEGGPSANAIEAEEVRTKWPLHKTPSMKKRVVHKTCKMDT
FT                   QAVEMFTRSLIKIFKAKNATIEFTARKTIRVDFVRKEQMKFARVQVAHLLGIRKKRDLS
FT                   SGVKENQFIDMLSNYSGSARTLQTGVIRAGWSGIVVRNGTLTQRRSRSPSQAFVIRGEH
FT                   EGKLYDARIKVTKTMSHTIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 354 A; 248 C; 269 G; 215 T; 0 other;

AB188861  Length: 1086  December 7, 2004 09:04  Type: N  Check: 4077  ..

       1  atggcagcag ttacattcgc agcagcgatc accaacacca tcaccaacaa
      51  accagcatcc accggaatgg tacagtttgg gagcttccca ccaacgccat
     101  tgcgatccac taccatcgcc acagtcgcca atccagtcgc gcaacctaag
     151  ctgtatacag tacagtttgg aagccttgac ccagtattag tcaagggtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctgaaccg
     301  aatgccgtgt tgaggatgta cgaggaagac aacagacgaa gagcaatctt
     351  tctagacttg gaaagtaagc taaataggcg cccatatggc attgctgaca
     401  atgagaagat catcatgaca gctcgtggcg tcagcaaaat agtgcctaga
     451  agcacaaggg caatgaaaca caagcgtgct agagaaagac gtagagcgca
     501  acagccgatt ttactaaagt acgaacccat acttaatgag ctctcgattg
     551  aaggagggcc ttctgcaaat gctattgaag cagaggaggt tcgcaccaag
     601  tggccactgc acaagacgcc atcgatgaag aaaagagtag tgcacaagac
     651  gtgcaagatg gacacccaag cggtcgaaat gtttacgcgt tccctgataa
     701  aaatcttcaa ggcaaagaac gcgactatcg aattcactgc aaggaaaact
     751  attagagttg actttgtgag aaaagagcaa atgaagtttg ctagagttca
     801  ggtggcacac ttactcggaa tacgaaagaa acgcgatttg tcatctggcg
     851  taaaagagaa ccaattcatt gacatgctca gcaactattc aggcagtgca
     901  agaactttac agacaggagt gatacgcgct ggctggagtg gaatcgtcgt
     951  taggaacgga accttaactc agaggcgaag tagaagccca tcacaagcct
    1001  tcgtaattag aggtgaacat gagggcaagc tgtacgacgc tagaattaaa
    1051  gtgacgaaaa ctatgagcca tacaatcgta catttc