Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CZE2.

ACC No: AB188862

Dated: 2004-12-03 | Length: 1086 | CRC: 1254262828

                !!NA_SEQUENCE 1.0
ID   AB188862   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188862;
XX
SV   AB188862.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CZE2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CZE2"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689Y4"
FT                   /db_xref="UniProt/TrEMBL:Q689Y4"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38681.1"
FT                   /translation="MAAVTFASAITNAITSKPALTGMVQFGSFPPMPLRSTTVTTVATS
FT                   VAQPKLYTVQFGSLDPVVVKSGAGSLAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAEDEKVVMTTHGVSKIVPRSSRAMKLKRAREK
FT                   RRAQQPIILKWEPKLSGISIGGGLSASVIEAEEVRTKWPLHKTPSMKKRTVHRICKMND
FT                   QGVDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGKRAQRDLL
FT                   TGMEENHFIDILSKYSGNKTTINPGVVCAGWSGIVVGNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 347 A; 235 C; 289 G; 215 T; 0 other;

AB188862  Length: 1086  December 7, 2004 09:04  Type: N  Check: 452  ..

       1  atggcagcag ttacattcgc atcagctatc accaacgcca tcaccagcaa
      51  accagcactc accggaatgg tgcagtttgg gagtttccca ccaatgccat
     101  tgcgatccac caccgtcacc acagtcgcca cttcagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc cttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagatcg
     301  aatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaggctagtt tgaagagaag ctcgtatgga attgctgagg
     401  acgagaaggt tgtaatgaca actcatggcg tcagcaagat agtgcccaga
     451  agttcaaggg caatgaagct aaagcgcgca agggagaagc gtagagcgca
     501  gcaaccaatt atattaaagt gggagcccaa attgagcggg atctcaatcg
     551  gaggagggct ctctgcgagc gtaatcgaag cagaagaggt tcgcacaaag
     601  tggccgcttc ataagacacc gtcaatgaag aagaggacgg tgcacagaat
     651  atgcaagatg aacgaccaag gagttgacat gttgacacga tccctggtta
     701  agattttcaa gactaagagt gccaacattg aatacatcgg aaagaagtcg
     751  attaaggtcg atttcatcag aaaagaacga acgaaattcg caagaatcca
     801  agtagcacac ttactcggga agagagcaca gcgcgacttg ttaactggaa
     851  tggaagaaaa ccattttatt gacattctca gcaagtactc aggtaacaaa
     901  acaaccataa atcctggagt agtttgcgca ggttggagtg gcatagtcgt
     951  tggaaatgga attctaaccc agaaacgaag cagaagtcca tcagaggcct
    1001  ttgtaattag aggtgagcac gaaggcaagt tgtacgatgc caggatcaaa
    1051  gtcacgagga caatgagtca caagattgtg cacttt