Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: DEU4.

ACC No: AB188869

Dated: 2004-12-03 | Length: 1086 | CRC: -1332333758

                !!NA_SEQUENCE 1.0
ID   AB188869   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188869;
XX
SV   AB188869.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: DEU4.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="DEU4"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689X7"
FT                   /db_xref="UniProt/TrEMBL:Q689X7"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38688.1"
FT                   /translation="MAAVTFAPAITNATANKPASTGMVQFGNFPPVPLRTTVATLVTTP
FT                   VAQPKLYTVQFGSLDPVVVKGKAGSSAKATRQQPSVGIDASLREAAALEVAKPKPNAVL
FT                   RMHEEANKERALFLNWETSLKRQSYGIAEHEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIVLKWEPQMSQFSIGGGPAANVIEAEEIRTKWPLHKTPSMKKKMVFKACRMNN
FT                   QGIDMLMRSLIKIFKAKNATIEYTAKKSINIDFVKKEQTKFARVQVAHMLGKRAQRDLL
FT                   TGVEENHFIDTVSGYSGNKRAINPGVVCAGWSGFIVRNGALNQNQSRSPSQAFVIRGEH
FT                   EGKLYDARVKVTKTMSHKIVHY"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 345 A; 245 C; 284 G; 212 T; 0 other;

AB188869  Length: 1086  December 7, 2004 09:04  Type: N  Check: 6702  ..

       1  atggcagcag taacattcgc accagcaatc accaacgcca ccgccaacaa
      51  accagcatcc accggaatgg tgcagtttgg gaacttccca ccagtaccat
     101  tgcgaaccac cgtcgcaacc ttagtcacca ctccagtggc gcaacccaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagttg tcaagggcaa
     201  agcagggtct tctgctaagg caacccgcca gcagcctagc gttggaatag
     251  acgctagcct cagggaagcc gcagctttag aggttgcaaa gcccaaacca
     301  aatgccgtgt tgaggatgca cgaagaagca aataaagagc gggcgctctt
     351  tttgaattgg gaaactagtt tgaaaaggca atcgtatggt atcgccgaac
     401  atgagaaagt cgtaatgaca actcgtggcg ttagcaagat agtgcccagg
     451  agttcacggg caatgaagca aaagcgcgca agagagaggc gtagagcaca
     501  acagccaatc gtgctgaaat gggagccaca gatgagccag ttctctattg
     551  gaggaggacc tgccgcaaat gtaattgagg cagaggaaat tcgcacgaag
     601  tggccgctac acaagacacc atcgatgaag aaaaagatgg tattcaaggc
     651  atgcagaatg aacaatcaag gaatcgacat gctgatgcgt tccttgatta
     701  agattttcaa ggcaaagaat gccactattg agtacaccgc gaagaaatct
     751  atcaacatag actttgttaa aaaggagcaa acaaagttcg ccagagttca
     801  ggtggcacat atgcttggca aacgagcaca acgtgacctg ttaactggag
     851  tggaagaaaa ccacttcatt gatactgtca gtggttattc aggcaacaag
     901  agagccataa acccaggagt agtgtgtgcc ggttggagcg gatttattgt
     951  taggaacgga gctctcaacc agaatcagag taggagtcca tcgcaggctt
    1001  tcgtgatcag aggcgaacat gaaggcaaat tgtatgatgc cagggttaag
    1051  gtcacgaaga ctatgagcca caagatcgtg cattat