Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR8.

ACC No: AB188878

Dated: 2004-12-03 | Length: 1086 | CRC: -406905219

                !!NA_SEQUENCE 1.0
ID   AB188878   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188878;
XX
SV   AB188878.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR8.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="GBR8"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689W8"
FT                   /db_xref="UniProt/TrEMBL:Q689W8"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38697.1"
FT                   /translation="MAAVTFASAITNAIINKPTSTGMVQFGSFPPMPLRSTTITTVATP
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSLAKATRQQPNVEIDVSLSEAAALEVAKPKSSAVL
FT                   RMHEEANKERALFLDWETSLKRRSHGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPITLKWEPKLSEFSIGGGSSASAIEAEEVRTKWPLHKTPSLKKRMVHKTCKMSD
FT                   QGVDMLIRSLVKIFKAKSANIEYIRKKSIKADFIRKERTKFARVQVAHLLGKRAQRDLL
FT                   AGVEENHFIDILSEYSGNKTVINPGVVCAGWSGVIVRNEALTQKRSRSPSKAFVIRGEH
FT                   EGKLYDARIKITKTMSLKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 344 A; 243 C; 288 G; 211 T; 0 other;

AB188878  Length: 1086  December 7, 2004 09:04  Type: N  Check: 2325  ..

       1  atggcagcag tcacatttgc atcagcaatc accaacgcca tcatcaacaa
      51  acctacatcc accggaatgg tacagttcgg gagtttccca ccaatgccat
     101  tacgttccac caccatcacc acagtcgcca ctccagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagggtgg
     201  agcagggtcc cttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcaaa acccaagtcg
     301  agtgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaaaccagtc taaagagacg ctcgcatgga attgctgaga
     401  acgagaaggt cgtgatgaca actcgtggcg ttagtaagat agtgcccaga
     451  agctcaaggg cgatgaagca aaagcgcgca agagagaggc gtagagcaca
     501  gcaaccaatc accctaaaat gggagcccaa attgagtgag ttctcaattg
     551  gaggaggatc ttctgcgagt gcgattgaag cagaggaagt tcgcacaaag
     601  tggccacttc acaagacacc gtcattgaag aagaggatgg tgcacaagac
     651  atgcaagatg agcgatcaag gagttgatat gttaatacgc tctctggtta
     701  agatcttcaa ggctaagagc gccaacatcg agtacatcag gaagaagtca
     751  attaaggctg atttcattag gaaagagcga acgaagttcg caagagtcca
     801  agtagcacac ctgctcggaa agagagcaca gcgcgatttg ttagccggag
     851  tggaagagaa ccactttatt gacattctca gcgagtattc aggcaacaaa
     901  acagtcataa acccaggagt agtatgtgcc ggttggagcg gagtgatcgt
     951  taggaacgaa gctctaactc agaaacggag cagaagtcca tcaaaagctt
    1001  ttgtaatcag gggtgagcac gaaggcaagt tgtatgatgc cagaatcaag
    1051  atcacaaaaa cgatgagtct taagatcgtg catttc