Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR51.

ACC No: AB188886

Dated: 2004-12-03 | Length: 1086 | CRC: 1797915675

                !!NA_SEQUENCE 1.0
ID   AB188886   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188886;
XX
SV   AB188886.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR51.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="GBR51"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689W0"
FT                   /db_xref="UniProt/TrEMBL:Q689W0"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38705.1"
FT                   /translation="MAAVTFASAITNAITNKPAPTGMVQFGSFPPMPLRSTTVTTVATP
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSLAKATRQQPNVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSHGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASTIEAEEVRTKWPLHKTPSMKKRTVHRTCKMNN
FT                   QGVDMLTRSLVKVFKTKSANIEYIGKKSIKVDFIRKERTKFAGIQVAHLLGKRAQRDLS
FT                   TGMEENHFIDILSGYSGNKTTISPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARTKVTRTMSHKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 349 A; 245 C; 289 G; 203 T; 0 other;

AB188886  Length: 1086  December 7, 2004 09:04  Type: N  Check: 7180  ..

       1  atggcagcag ttacattcgc atcagctatc accaacgcca tcaccaacaa
      51  accagcaccc accggaatgg tacagtttgg gagtttccca ccaatgccat
     101  tgcgatccac caccgtcacc acagtcgcca ctccagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagggtgg
     201  agcagggtcc cttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcaaa acctagatcg
     301  aatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaggcaagtt tgaagagaag ctcgcatgga attgctgaga
     401  acgagaaagt tgtaatgaca actcgtggcg ttagcaagat agtgcccaga
     451  agttcaaggg caatgaagca aaagcgcgca agggagaggc gtagagcgca
     501  gcaaccaatc atactaaaat gggagcccaa attgagcggg atctcaattg
     551  gaggagggct ctctgcgagt acgatcgaag cagaagaagt ccgcacaaag
     601  tggccgcttc acaaaacacc gtcaatgaag aagaggacgg tgcacagaac
     651  atgcaagatg aacaaccaag gagttgacat gttgacacga tccctggtta
     701  aagttttcaa gactaagagt gccaacattg agtacatcgg aaagaagtcg
     751  atcaaggtcg atttcatcag aaaagagcgg acgaaattcg caggaatcca
     801  agtagcacac ttactcggga agcgagcgca gcgcgactta tcaactggaa
     851  tggaagaaaa ccattttatt gacattctca gcgggtactc aggtaacaaa
     901  acaaccataa gtccaggagt agtttgcgca ggttggagtg gcatagtcgt
     951  tagaaacgga attctaaccc agaaacgaag caggagtcca tcagaggcct
    1001  ttgtaattag aggtgagcac gaaggcaagt tgtatgatgc caggaccaaa
    1051  gtcacgagaa caatgagtca caagattgtg cacttt