Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR58.

ACC No: AB188888

Dated: 2004-12-03 | Length: 1086 | CRC: 418363103

                !!NA_SEQUENCE 1.0
ID   AB188888   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188888;
XX
SV   AB188888.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR58.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="GBR58"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689V8"
FT                   /db_xref="UniProt/TrEMBL:Q689V8"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38707.1"
FT                   /translation="MAAVTFASAITNAITNKPASTGMVQFGSFPPMPLRSATVTTVATP
FT                   MAQPKLYTVQFGNLDPVVVKGRAGSLAKATRQQPNVEIDVSLSEAAALEVAKPKPNAVL
FT                   RMHEEANKERALFLDWEAGLKKRSYGVAENEKVVMTTRGVSKVVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSEFSIGGGLSASAIEAEEVRTKWPLHKTPSMKRRKVHKMCRMNE
FT                   QGIDMLMRSLIKIFKAKSADIEYTGKKSIKIDFVEKKRTKFARVQVAHLLGKRAQRDLS
FT                   TGVEENHFIDTLSSFSGSKKSIKPGVVCAGWSGIIVRGGVLTQKQSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTKTMSHKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 352 A; 230 C; 291 G; 213 T; 0 other;

AB188888  Length: 1086  December 7, 2004 09:04  Type: N  Check: 3133  ..

       1  atggcagcag ttacattcgc atcagcaatc accaacgcca tcaccaacaa
      51  accagcatcc accggaatgg tacagtttgg gagcttccca ccaatgccat
     101  tgcgttccgc taccgtaacc acagtcgcta ctccaatggc gcaacctaag
     151  ctgtacacag tgcagtttgg aaaccttgac ccagtagtcg tcaagggtag
     201  agcagggtcc cttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcaaa acccaaaccg
     301  aatgccgtgt tgaggatgca cgaagaagca aacaaggaga gagcactctt
     351  cttggactgg gaagccggtc taaagaaacg ctcatatgga gttgctgaga
     401  acgagaaggt cgtgatgaca actcgtggag tcagtaaggt agtgcccaga
     451  agttcaaggg cgatgaagca aaagcgcgca agagagaggc gtagagcgca
     501  gcaaccaatc atattaaagt gggagcccaa gttgagtgaa ttctcaattg
     551  gaggaggact ctccgctagc gcgattgaag cagaagaagt gcgcacaaag
     601  tggccgctac acaagacacc gtcaatgaag agaaggaagg tgcacaaaat
     651  gtgcagaatg aacgaacagg gaatcgacat gttgatgcgt tccttgatca
     701  aaattttcaa ggcaaagagt gcagacatag agtacactgg gaaaaagtct
     751  attaagatag actttgtgga aaagaagcga actaaattcg ctagggttca
     801  agtggcacac ttgctcggga aaagagcaca acgcgatttg tcaactggag
     851  tggaggaaaa tcattttatc gacactctca gcagcttttc aggaagtaag
     901  aaatccataa aaccgggagt agtatgtgcc ggttggagtg gtattatcgt
     951  taggggtgga gtcctaactc agaagcaaag cagaagtcca tcggaagctt
    1001  tcgtgatcag aggtgaacat gaaggcaaat tgtatgatgc aaggataaag
    1051  gtcacgaaaa caatgagcca taaaatcgtg catttc