Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC32.

ACC No: AB188895

Dated: 2004-12-03 | Length: 1086 | CRC: -224892081

                !!NA_SEQUENCE 1.0
ID   AB188895   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188895;
XX
SV   AB188895.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC32.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="GRC32"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689V1"
FT                   /db_xref="UniProt/TrEMBL:Q689V1"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38714.1"
FT                   /translation="MAAVTFASAITNAITSKPALTGMVQFGSFPPMPLRSTTVTTVATS
FT                   VAQPKLCTVQFGSLDPVVVKSGAGSFAKATRQQPSVEIDVSLSEAAALEVAKPRSNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTRGVSKIVPRSSRAMKLKRARER
FT                   RRAQQPIILKWEPKLSGISIGGGLSASAIETEEVRTKWPLHKTSSMKKRMVHRTCKMND
FT                   QGVDMLTRSLVKIFKTKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLSGKRAQRDLS
FT                   TGTEENHFIDILSEYSGSKTTINPGVVCAGWSGIVVRNGILTQKRSRSPSEAFVIRGEH
FT                   EGKLYDARIKVTKTMSHKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 352 A; 238 C; 286 G; 210 T; 0 other;

AB188895  Length: 1086  December 7, 2004 09:05  Type: N  Check: 9757  ..

       1  atggcagcag ttacattcgc atcagctatc accaacgcca tcaccagcaa
      51  accagcactc accggaatgg tgcagtttgg gagcttccca ccaatgccat
     101  tgcgatccac caccgtcacc acagtcgcca cttcagtggc gcaacccaaa
     151  ctgtgcacag tgcagtttgg aagccttgac ccagtagtcg tcaagagtgg
     201  agcagggtcc tttgctaagg caacacgcca gcagcctagc gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acctagatcg
     301  aatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactatt
     351  tttggactgg gaagctagtt tgaaaagaag ctcgtatgga attgctgaga
     401  acgagaaggt tgtaatgaca actcgtggcg tcagcaagat agtgcctaga
     451  agttcaaggg caatgaaact aaagcgcgca agggagaggc gtagagcgca
     501  gcaaccaatt atactaaagt gggagcccaa attgagcggg atctcgatcg
     551  gaggaggact ctctgcgagc gcgatcgaaa cagaagaagt ccgcacaaag
     601  tggccgcttc acaagacatc gtcaatgaag aagaggatgg tgcacagaac
     651  atgcaagatg aacgaccaag gagttgacat gttgacacga tccctggtta
     701  agattttcaa gactaagagt gccaacattg agtacatcgg aaagaagtcg
     751  attaaggtcg atttcatcag aaaagaacga acgaagttcg caagaatcca
     801  agtagcacac ttatccggaa agagagcaca gcgcgactta tcaactggaa
     851  cggaagaaaa ccatttcatt gatattctca gcgaatactc aggtagcaaa
     901  acaaccataa atccaggagt agtttgcgca ggttggagtg gcatagtcgt
     951  tagaaatgga attctaaccc agaagcgaag cagaagtcca tcagaggctt
    1001  ttgtaattag aggtgagcac gaaggcaagc tgtacgatgc cagaatcaaa
    1051  gtcacgaaaa caatgagtca taagattgtg cacttt