Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC43.

ACC No: AB188898

Dated: 2004-12-03 | Length: 1086 | CRC: 417210677

                !!NA_SEQUENCE 1.0
ID   AB188898   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188898;
XX
SV   AB188898.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC43.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="GRC43"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689U8"
FT                   /db_xref="UniProt/TrEMBL:Q689U8"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38717.1"
FT                   /translation="MAAVTFASAITNATINKSTSTGMVQFGSFPPVPLRSTTAITVVTP
FT                   VAQPKLHTMQFGSLDPIVVKGEAGSSVKETRRQLNVKEDVNLRGTATLEVVKPQSSIVV
FT                   RMQEEANREKAIFLDFENSLGRRPYGIAQNEKVIMTARGVSKIVPISTRAMKHKRARER
FT                   RRLEQPITLKWEPKLSEFSIGGRPSAKTIEEEETHTKWPLHKTPSTKKRTVHKKCRMDY
FT                   QGIEMLMRSLIKISKAKNANIEFTDKKTIKVDFVRKERTKFARIQVAHLLGKRGKRDLL
FT                   SGKKENQFIDILSSYSGNMKAIKPGVVCAGWSGIVVRNEILTQKRSRSPSQAFVIRGEH
FT                   EGKLYDARIKVTRTMSHKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 368 A; 221 C; 265 G; 232 T; 0 other;

AB188898  Length: 1086  December 7, 2004 09:05  Type: N  Check: 7048  ..

       1  atggcagcag ttacattcgc atcagcaatc accaacgcca ccattaacaa
      51  atcaacatcc accggaatgg tacagttcgg gagttttcca ccagtgccat
     101  tacgatccac caccgctatc acagttgtca ctccagtggc acaacctaag
     151  ttgcacacaa tgcaatttgg aagccttgac ccaatagtcg tcaagggtga
     201  agcagggtcc tctgttaagg aaacccgccg gcagcttaac gttaaagaag
     251  acgttaacct cagggggacc gcgactttgg aggttgtgaa gccccaatcg
     301  agtattgtgg taaggatgca ggaagaagcg aatagagaga aagcaatttt
     351  ccttgatttt gaaaatagcc tcggaaggcg tccatatggc attgcccaaa
     401  atgagaaagt tatcatgaca gctcgaggcg tcagcaaaat agtgcctatt
     451  agcacaagag cgatgaaaca caaacgagct agagaaaggc gcagattgga
     501  acagccaatc accctaaagt gggagcctaa gctcagtgaa ttctcaattg
     551  gaggaaggcc ttctgctaaa acaattgaag aagaggaaac ccacacgaag
     601  tggccactgc ataagacacc atcgacgaag aaaaggacag tgcacaagaa
     651  atgcagaatg gattatcaag gtattgaaat gttaatgcgc tccttaatta
     701  aaatttccaa agctaaaaac gctaatattg aattcactga caagaagact
     751  attaaagtgg actttgtgag aaaggaacga acgaagttcg ctagaataca
     801  agtggcgcac ttacttggaa agagaggaaa gcgtgatttg ttgtctggta
     851  agaaggagaa ccaattcatt gacattctca gcagctattc aggtaacatg
     901  aaagcaataa aaccaggagt agtttgcgct ggctggagcg gaatcgtcgt
     951  cagaaatgaa atcctgactc aaaagcgaag taggagtccg tcacaagctt
    1001  ttgtgattag aggcgagcat gagggtaagt tgtacgatgc cagaattaaa
    1051  gtgacgcgaa ctatgagcca caagattgtg catttt