Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA6.

ACC No: AB188904

Dated: 2004-12-03 | Length: 1086 | CRC: -1228782356

                !!NA_SEQUENCE 1.0
ID   AB188904   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188904;
XX
SV   AB188904.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA6.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ITA6"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689U2"
FT                   /db_xref="UniProt/TrEMBL:Q689U2"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38723.1"
FT                   /translation="MAAVTFASAITNATINKPASTGMVQFGNFPPVPLRTTATTTVATP
FT                   VAQPKLYTVQFGSLDPVVVKGEAGSSAKTTRQQPNVEIDVSLREVAALEVAKPKPNAVL
FT                   RMHEETNKERALFLDWETSLKRRPHGIAENEKVVMTTRGVSKIVPRSSRAMKLKRARER
FT                   RSSQKPIVLKWEPKLSEISIGGGPSASELEAEEARTKWPLHKTPSTKKKMARKACRMNS
FT                   QGIDMLMRSLIKIFKAKSANIEYVGRKSIKIDFVKKEQAKFARVQVAHLLGKRAQRDLS
FT                   TGIEENRFIDILSGYSGDKRVINPGVVCAGWSGVIVRNGVLAQRQSRSPSRAFVIRGEH
FT                   EGKLYDARIKITKTMSHKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 356 A; 227 C; 280 G; 223 T; 0 other;

AB188904  Length: 1086  December 7, 2004 09:05  Type: N  Check: 3902  ..

       1  atggcagcag tcacattcgc atcagcaatc actaacgcca ccatcaacaa
      51  accagcatcc accggaatgg tacagttcgg aaatttccca ccagtgccgt
     101  tacgaaccac cgccactacc acagtcgcca ctccagtggc gcaacccaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagttg ttaagggtga
     201  agcagggtcc tctgctaaga caacccgcca gcagcctaac gttgaaatag
     251  atgttagcct cagggaagtc gcagctttgg aggttgcaaa acccaaacca
     301  aacgccgtgt tgaggatgca cgaggaaact aacaaggagc gagcactctt
     351  tttagactgg gaaactagtt tgaaaagaag accacatggc atcgccgaga
     401  atgagaaggt cgtgatgact actcgtggtg ttagcaaaat agtacccagg
     451  agttcgaggg cgatgaagct aaagcgcgca agagagaggc gtagctcgca
     501  gaaaccaatt gtgttaaagt gggagcccaa attgagtgaa atctcgattg
     551  gaggaggacc ctctgcaagt gaacttgaag cagaggaagc tcgtacaaaa
     601  tggccactac acaagacacc gtcaacgaag aagaagatgg cgcgcaaagc
     651  gtgtagaatg aatagtcaag gaattgacat gttaatgcgt tccttgatta
     701  aaatcttcaa agcaaagagc gccaacattg agtacgtcgg aaggaagtct
     751  atcaagatag actttgtaaa gaaagagcaa gcaaaatttg ctagagttca
     801  agttgcacat ttacttggaa agagagcaca gcgcgacttg tcaactggaa
     851  tagaggaaaa ccgctttatt gacattctaa gtggctactc aggtgacaag
     901  agagttataa acccaggagt ggtttgcgct ggctggagtg gggttattgt
     951  tagaaatgga gttctagccc agagacagag caggagtcca tcaagggctt
    1001  ttgtaatcag aggtgaacac gaaggcaaat tatatgatgc cagaattaaa
    1051  atcacgaaaa cgatgagtca taagatagtg catttt