Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: NLD1.

ACC No: AB188907

Dated: 2004-12-03 | Length: 1086 | CRC: 1863168426

                !!NA_SEQUENCE 1.0
ID   AB188907   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188907;
XX
SV   AB188907.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: NLD1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="NLD1"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689T9"
FT                   /db_xref="UniProt/TrEMBL:Q689T9"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38726.1"
FT                   /translation="MAAVTFASVITNAITNKPASTGMVQFGSFPPMPLRSTAVTTIATS
FT                   VAQPKPYTVQFGSLDPVIVKGGVGSFAKVTRQQPNVEIDVSLSEAAALEVAKPRPNAVL
FT                   RMHEEANKERALFLDWEASLKRSSYGIAENEKVVMTTHGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPIILKWEPKLSGFSIGGGLSASAIETEEVRTKWPLHKTPSMKRKTVHRMCKMND
FT                   QGVDMLTRSLVKIFKAKSANIEYIGKKSIKVDFIRKERTKFARIQVAHLLGKRAQRDLL
FT                   TGVEENRFIDILSGYSGNKTTMNPGVVCAGWSGIVVRKGILTQKQSRSPSDAFVIRGEH
FT                   EGKLYDARIKVTKTMSHKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 346 A; 239 C; 290 G; 211 T; 0 other;

AB188907  Length: 1086  December 7, 2004 09:05  Type: N  Check: 1599  ..

       1  atggcagcag ttacattcgc atcagtcatc accaacgcca tcaccaacaa
      51  accagcatcc accggaatgg tacagtttgg gagtttccca ccgatgccat
     101  tgcgatccac cgctgttacc acaatcgcca cctcagtggc gcagcctaaa
     151  ccgtacacag tgcagtttgg aagccttgac ccagtaatcg tcaagggtgg
     201  agtagggtcc tttgctaagg tgacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcgaa acccagaccg
     301  aatgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaagctagtt tgaagagaag ctcgtatgga attgccgaaa
     401  acgagaaggt tgtaatgaca actcatggcg ttagcaagat agtgcccaga
     451  agttcaaggg cgatgaagca aaagcgcgca agggagaggc gtagagcgca
     501  acaaccaatc atactaaagt gggaacccaa attgagcggg ttctcaattg
     551  gaggagggct ctctgcgagc gcgatcgaaa cagaggaagt tcgcacaaag
     601  tggccacttc acaagacacc gtcaatgaag aggaagacgg tgcacagaat
     651  gtgcaagatg aacgaccaag gagttgacat gttgacacga tccctggtta
     701  agattttcaa ggctaagagt gccaacattg agtacattgg aaagaagtcg
     751  atcaaggttg atttcatcag aaaagaacga acgaaattcg caagaatcca
     801  agtagcacac ttactcggga agcgagcaca acgtgacttg ttaactggag
     851  tggaagaaaa ccgctttatc gacatcctca gcgggtactc aggtaacaaa
     901  acaaccatga acccaggagt agtatgcgca ggttggagtg gtatagtcgt
     951  tagaaaggga atcctaaccc agaagcaaag caggagtcca tcagatgcct
    1001  ttgttattag aggtgaacac gaaggcaagt tgtacgatgc caggatcaaa
    1051  gttacgaaaa caatgagtca caagattgtg cacttt