Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: POL1.

ACC No: AB188909

Dated: 2004-12-03 | Length: 1086 | CRC: 1039159996

                !!NA_SEQUENCE 1.0
ID   AB188909   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188909;
XX
SV   AB188909.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: POL1.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="POL1"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689T7"
FT                   /db_xref="UniProt/TrEMBL:Q689T7"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38728.1"
FT                   /translation="MAAVTFASAITNAIINKPTSTGMVQFGSFPPMPLRPTTITTVATP
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSLAKATRQQPNVEIDVSLSEATALEVAKPKSSAVL
FT                   RMHEEANKERALFLDWETGLKRRSHGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPITLKWEPKLSEFSIGGGSSASAIEAEEVRTKWPLHKTPSLKKRMVHKTCKMSD
FT                   QGVDMLIRSLVKIFKAKSANIEYIRKKSIKADFIRKERTKFARVQVAHLLGKRAQRDLL
FT                   AGVEENHFIDILSEYSGNKTVINPGVVCAGWSGVIVRNEALTQKRSRSPSKAFVIRGEH
FT                   EGKLYDARIKITKTMSLKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 344 A; 242 C; 288 G; 212 T; 0 other;

AB188909  Length: 1086  December 7, 2004 09:05  Type: N  Check: 2578  ..

       1  atggcagcag tcacatttgc atcagcaatc accaacgcca tcatcaacaa
      51  acctacatcc accggaatgg tacagttcgg gagcttccca ccaatgccat
     101  tacgtcccac caccatcacc acagtcgcca ctccagtggc gcaacctaaa
     151  ctgtacacag tgcagtttgg aagccttgac ccagtagtcg tcaagggtgg
     201  agcagggtcc cttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc acagctctgg aggttgcaaa acctaagtcg
     301  agtgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaaaccggtc taaagagacg ctcgcatgga attgctgaga
     401  acgagaaggt cgtgatgaca actcgtggcg ttagtaagat agtgcccaga
     451  agttcaaggg cgatgaagca aaagcgcgca agagagaggc gtagagcaca
     501  gcaaccaatc accctaaaat gggagcccaa attgagtgag ttctcaattg
     551  gaggaggatc ttctgcgagt gcgattgaag cagaggaagt tcgcacaaag
     601  tggccacttc acaagacacc gtcattgaag aagaggatgg tgcacaagac
     651  atgcaagatg agcgatcaag gagttgatat gttaatacgc tctctggtta
     701  agatctttaa ggctaagagc gccaacatcg agtacatcag aaagaagtca
     751  attaaggctg atttcattag gaaagagcga acgaagttcg caagagttca
     801  agtagcacac ctgctcggaa agagagcaca gcgcgatttg ttagccggag
     851  tggaagagaa ccactttatt gacattctca gcgagtactc aggcaacaaa
     901  acagtcataa acccaggagt agtatgtgcc ggttggagcg gagtgatcgt
     951  taggaacgaa gctctaactc agaaacggag cagaagtcca tcaaaagctt
    1001  ttgtaatcag gggtgagcac gaaggcaagt tgtatgatgc caggatcaag
    1051  atcacaaaaa cgatgagtct taagatcgtg catttc