Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: POL4.

ACC No: AB188911

Dated: 2004-12-03 | Length: 1086 | CRC: -552144708

                !!NA_SEQUENCE 1.0
ID   AB188911   standard; genomic RNA; VRL; 1086 BP.
XX
AC   AB188911;
XX
SV   AB188911.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: POL4.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1086
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1086
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="POL4"
FT   CDS             1. .>1086
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689T5"
FT                   /db_xref="UniProt/TrEMBL:Q689T5"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38730.1"
FT                   /translation="MAAVTFASVITSAIINKPTSTGMVQFGSFPPMPLRSTTITTVATP
FT                   VAQPKLYTVQFGSLDPVVVKGGAGSLAKATRQQPNVEIDVSLSEAAALEVAKPKSSAVL
FT                   RMHEEANKERALFLDWETGLKRRSHGIAENEKVVMTTRGVSKIVPRSSRAMKQKRARER
FT                   RRAQQPITLKWEPKLSEFSIGGGSSASAIEAEEVRTKWPLHKTPSLKKRMVHKTCKMSD
FT                   QGVDMLIRSLVKIFKDKSANIEHIRKKSIKADFIRKERTKFARVQVAHLLGKRAQRDLV
FT                   AGVEENHFIDILSEYSGNKTVINPGVVCAGWSGVIVRNEVLTQKRSRSPSKAFVIRGEH
FT                   EGKLYDARIKITKTMSLKIVHF"
FT   mat_peptide     1. .>1086
FT                   /gene="P1"
FT                   /product="P1 protein"
XX
SQ   Sequence 1086 BP; 346 A; 238 C; 288 G; 214 T; 0 other;

AB188911  Length: 1086  December 7, 2004 09:05  Type: N  Check: 4308  ..

       1  atggcagcag tcacatttgc atcagtaatc accagcgcca tcattaacaa
      51  acctacatcc accggaatgg tacagttcgg gagcttccca ccaatgccat
     101  tacgttccac caccatcacc acagtcgcca ctccagtggc acaacctaaa
     151  ctatacacag tgcagtttgg aagccttgac ccagtagtcg tcaagggtgg
     201  agcagggtcc cttgctaagg caacacgcca gcagcctaac gttgaaatag
     251  acgttagcct cagtgaagcc gcagctctgg aggttgcaaa acccaagtcg
     301  agtgccgtgt tgaggatgca cgaggaagca aacaaggaga gagcactctt
     351  tttggactgg gaaaccggtc taaagagacg ctcgcatgga attgctgaga
     401  acgagaaggt cgtgatgaca actcgtggcg ttagtaagat agtgcccaga
     451  agttcaaggg cgatgaagca aaagcgcgca agagagaggc gtagagcaca
     501  gcaaccaatc accctaaaat gggagcccaa attgagtgag ttctcaattg
     551  gaggaggatc ttctgcgagt gcgattgaag cagaggaagt tcgcacaaag
     601  tggccacttc acaagacacc gtcattgaag aagagaatgg tgcacaagac
     651  atgcaagatg agcgatcaag gagttgatat gttaatacgc tctctggtta
     701  agatcttcaa ggataagagc gccaacatcg agcacatcag aaagaagtca
     751  attaaggctg atttcattag gaaagagcga acgaagttcg caagagttca
     801  agtagcacac ttgctcggaa agagagcaca gcgcgatttg gtagccggag
     851  tggaagagaa ccactttatt gacattctca gcgagtactc aggcaacaaa
     901  acagtcataa acccaggagt agtatgtgcc ggttggagcg gagtgattgt
     951  taggaacgaa gttctaactc agaaacggag cagaagtcca tcaaaagctt
    1001  ttgtaatcag gggtgagcac gaaggcaagt tgtatgatgc caggatcaag
    1051  atcacaaaaa cgatgagtct taagatcgtg catttc