Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CZE10.

ACC No: AB188917

Dated: 2004-12-03 | Length: 1527 | CRC: -760285490

                !!NA_SEQUENCE 1.0
ID   AB188917   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB188917;
XX
SV   AB188917.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CZE10.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CZE10"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689S9"
FT                   /db_xref="UniProt/TrEMBL:Q689S9"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38736.1"
FT                   /translation="TDGISRNFMSEYGALEAVHHQSTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMILQRLQSGVTEPVVHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKTKGKTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDESPF
FT                   TDITLVQKHFGDIRTDLIKEDELEPQALQYHKTIQAYYTNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREFELRQTGKAQPISIDEVPKANTELVPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIRNTTQLQL
FT                   LPVPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT                   TIEIHDWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 511 A; 328 C; 344 G; 344 T; 0 other;

AB188917  Length: 1527  December 7, 2004 09:04  Type: N  Check: 5087  ..

       1  acagatggga tttctcgaaa ttttatgagt gaatatggag cgcttgaggc
      51  agtccaccat caaagcacca atgacatgag caagttcctt aagctaaagg
     101  gcaaatggaa caaaacgcta atcacaagag atgttttagt tatctgcggg
     151  gttcttggag gtggaatttg gatgattcta cagcgtctac agtctggagt
     201  cactgaaccc gtagtacacg aggcaaaagg aaagaggcag agacagaagc
     251  taaagttccg caacgcccga gacaacaaga tgggcagaga agtctatgga
     301  gatgatgaca ctatagaaca cttctttggg gacgcttaca caaagaaggg
     351  aaaaaccaaa ggtaagacac gtggtcttgg tcacaaaaac aggaaattca
     401  ttaacatgta tggatttgat cctgaagatt tctccgcagt aaggttcgtg
     451  gacccactca caggagcgac attagatgaa agtcctttca cagatatcac
     501  tttagtccaa aagcattttg gggacatacg aactgatcta attaaagaag
     551  atgaactcga accacaggca ctacaatatc acaaaacaat ccaagcttac
     601  tacacgaaca acaaaacagg taaggctttg aaagtagact taacaccgca
     651  catacctctt aaggtatgcg atcttcatgc caccattgct ggttttccag
     701  aacgagaatt cgagctgagg cagactggaa aagctcaacc aataagcata
     751  gatgaggtgc ccaaagctaa caccgaattg gtcccggttg atcacgaaag
     801  tagttccatg ttcagaggct tgcgcgatta caatccaata tcaaacaaca
     851  tttgtcacct cacaaatgtc tcagatgggg cgtcaaactc attgtatggg
     901  gttggttttg gaccactcat actaacaaac cgacatctct ttgaacggaa
     951  taatggagag ctcataataa aatcgcgaca cggtgagttc gtgatcagga
    1001  acacaacgca actccagctg ctgccagttc cagacaggga cctactgcta
    1051  attcgattac caaaggacat cccacctttc ccgcaaaaac taggattcag
    1101  acaacctgag aagggagaga gaatctgcat ggtaggatcc aacttccaaa
    1151  cgaagagcat taccagtgtg gtttcagaaa ctagcacaat aatgccagtg
    1201  gagaacagtc aattttggaa gcattggatt agcacaaaag atggccaatg
    1251  tggcagccca atggtaagta caaaggacgg aaagatactt ggattgcaca
    1301  gtctagccaa tttccaaaac tccatcaatt atttcgctgc tttcccagat
    1351  gatttcgccg agaaatacct ctacacaatc gagatacatg attgggtcaa
    1401  gcactggaag tataacacta gcgggattag ttggggctct ttgaatattc
    1451  aagcagcaca accagcaggt ctattcaagg tgagcaagtt gatatcagat
    1501  ctcgatagta cagcggttta cgcgcaa