Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: DEU5.

ACC No: AB188922

Dated: 2004-12-03 | Length: 1527 | CRC: 374927428

                !!NA_SEQUENCE 1.0
ID   AB188922   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB188922;
XX
SV   AB188922.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: DEU5.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="DEU5"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689S4"
FT                   /db_xref="UniProt/TrEMBL:Q689S4"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38741.1"
FT                   /translation="TDGISRSFMRDYGALEAVHHQSTNEMSKFLQLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMIVQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQKHFGDIRMDLLGEDELDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQAAQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 500 A; 347 C; 357 G; 323 T; 0 other;

AB188922  Length: 1527  December 7, 2004 09:04  Type: N  Check: 9369  ..

       1  actgacggaa tatctcggag ctttatgaga gattacggag cactcgaggc
      51  agttcaccat caaagcacta atgaaatgag caagttccta cagctcaagg
     101  gcaagtggaa caaaacgcta atcacgcgag atgtgctggt catttgcgga
     151  gtacttggag gaggaatttg gatgattgtc caacacttac gctcaaaaat
     201  ttctgagccc gtaactcatg aggcgaaagg caagaggcaa agacagaaac
     251  tgaagtttcg caatgcccga gacaacaaaa tgggtaggga agtgtatgga
     301  gacgacgaca ccatagagca tttctttgga gatgcctaca caaagaaagg
     351  aaagagcaaa ggcaggacgc gtggcatcgg gcacaaaaac aggaagttca
     401  ttaacatgta tggctttgat cctgaagatt tctctgcagt taggttcgta
     451  gatccactca caggagcgac actagacgat aacccattca cagacatcac
     501  ccttgtgcaa aagcactttg gtgacataag aatggattta ctcggagagg
     551  atgaactgga cccaaatgag atacgagtga acaagacaat ccaggcatac
     601  tacatgaaca ataaaacagg caaagctttg aaggtcgatc tgacaccgca
     651  catacctctc aaggtgtgtg accttcatgc aaccattgcc ggatttccag
     701  agcgagaaaa cgaactgagg cagactggaa aggctcagcc catcaacata
     751  gacgaagtgc caagagctaa caatgaactc gtcccagtag accatgagag
     801  caactccatg ttcagaggac tgcgcgacta caacccaatc tcgaacaaca
     851  tttgtcatct tacaaatgtg tcagatgggg catcaaactc gttatatggg
     901  gtcggtttcg gaccactcat attaacgaac cgacatctct ttgagcggaa
     951  caatggcgag cttgtgataa agtcacgaca tggcgagttt gtaattaaaa
    1001  acacaactca gctacatcta ctcccaatac cagataggga tcttttgcta
    1051  atccgattgc caaaggacgt cccacctttt ccacagaaac taggcttcag
    1101  acaacctgaa aagggtgagc gaatttgcat ggtaggatcc aatttccaga
    1151  ctaagagcat aacgagtata gtctctgaga ctagtacgat aatgccagtg
    1201  gagaacagtc aattttggaa acactggatt agcactaaag acggccaatg
    1251  cggaagtcca atggtgagca caaaggacgg gaaaatactc ggattacaca
    1301  gcctggcgaa cttccagaac tccatcaatt actttgctgc tttcccagat
    1351  gactttgccg agaagtatct tcacaccatt gaagcacacg agtgggtcaa
    1401  gcattggaag tataacacta gcgccatcag ttggggctct ctgaatatac
    1451  aagcagcgca accatcaggc ttgttcaaag taagcaagtt aatctcagac
    1501  ctcgacagca cggcagtcta cgcacaa