Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: DEU7.
ACC No: AB188923
Dated: 2004-12-03 | Length: 1527 | CRC: 1709019612
!!NA_SEQUENCE 1.0
ID AB188923 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB188923;
XX
SV AB188923.1
XX
DT 27-AUG-2004 (Rel. 81, Created)
DT 03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: DEU7.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA Ohshima K.;
RT "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT in West and East Eurasia";
RL Virology 330:408-423(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="DEU7"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="GOA:Q689S3"
FT /db_xref="UniProt/TrEMBL:Q689S3"
FT /product="polyprotein"
FT /protein_id="BAD38742.1"
FT /translation="TDGISRSFMSEYGALEAVHHQSTNDMSKFLKLKGKWNKTLITRDV
FT LVLCGVLGGGIWMIIQRLQSGITEPVAHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDENPF
FT TDITLVQKHFGDIRATLLEEDELEPEALRFHNTIQAYYTNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPEREFELRQTGKAQPINIEEVPKANTELVQVDHESSSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGIGFGPLILTNRHLFERNNGELLIKSRHGEFVIKNTTQLRL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQAKSITSVVSETSTVMP
FT VENSQFWKHWISTKDGQCGSPVVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT TIETHEWVKHWKYNTSGISWGSLKIQAAQPAGLFKVSKLVSDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 485 A; 325 C; 363 G; 354 T; 0 other;
AB188923 Length: 1527 December 7, 2004 09:04 Type: N Check: 9769 ..
1 accgatggga tttctcggag tttcatgagc gagtatggag cactcgaggc
51 agttcatcac caaagcacca atgatatgag caagttcctt aagcttaagg
101 gcaagtggaa caaaacactg attacaagag acgttttggt tctttgcggg
151 gtccttggag gtggaatttg gatgatcata cagcgcctgc agtccggaat
201 tactgaaccc gtagcccatg aggcaaaagg caagaggcag agacaaaagc
251 ttaaattccg caatgctcga gataataaaa tgggtaggga agtttacggg
301 gacgatgata ctatagaaca tttctttgga gatgcctaca caaagaaggg
351 aaaaagcaag ggtaggacac gtggtcttgg tcacaaaaat aggaaattca
401 tcaatatgta tggattcgac cctgaggatt tttctgcagt tagattcgtg
451 gacccactta caggagcaac attggatgag aatccgttca cggatataac
501 ccttgtgcaa aaacactttg gagatatacg agccactctg ctcgaggaag
551 atgaactaga gccggaagca ctgcgatttc ataatacaat tcaggcttac
601 tatacaaata acaaaacagg caaggctttg aaagtagact tgacaccaca
651 catacccctc aaagtgtgcg accttcacgc aactattgct ggattcccag
701 agcgagagtt tgaactgagg caaaccggaa aggctcaacc cataaacata
751 gaggaagtac ctaaagccaa caccgaattg gttcaagtcg accacgaaag
801 tagttctatg tttagaggac tacgcgacta taacccaata tcgaacaaca
851 tttgtcatct aacaaatgtt tcggatggag catcaaactc attatatggg
901 attggttttg gtccactcat actaacaaac cggcatctct ttgaacggaa
951 caatggagag ctcttgataa agtcacgaca cggtgagttc gtaatcaaga
1001 atacaaccca gctccgtctg ttgccgatcc cggacagaga cctcctgcta
1051 atccgtctac cgaaggacat tccacctttt cctcaaaaat tgggattcag
1101 acaacctgag aagggggaga ggatatgtat ggtaggatcc aatttccaag
1151 caaagagtat cactagtgtg gtctcagaga ctagcacagt aatgccagtg
1201 gagaacagcc agttttggaa gcattggatc agcactaagg acggccaatg
1251 tggcagccca gtggtgagca cgaaagacgg gaagatactt gggctacaca
1301 gtttagctaa tttccaaaac tccataaatt atttcgctgc ttttccagat
1351 gattttgccg agaagtatct ttatactatc gagacacatg aatgggtcaa
1401 gcactggaaa tacaacacta gcgggatcag ttggggctcc ttaaaaatcc
1451 aagcggctca accagcaggt ttgtttaagg ttagcaagtt ggtatcagac
1501 ctcgacagca cagcggttta cgcgcaa