Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR31.
ACC No: AB188933
Dated: 2004-12-03 | Length: 1527 | CRC: -2036357494
!!NA_SEQUENCE 1.0
ID AB188933 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB188933;
XX
SV AB188933.1
XX
DT 27-AUG-2004 (Rel. 81, Created)
DT 03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR31.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA Ohshima K.;
RT "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT in West and East Eurasia";
RL Virology 330:408-423(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="GBR31"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="GOA:Q689R3"
FT /db_xref="UniProt/TrEMBL:Q689R3"
FT /product="polyprotein"
FT /protein_id="BAD38752.1"
FT /translation="TDGISRHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT TDITLVQEHFGNIRMDLLGEDELDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTRSITSIVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFVEKYLH
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 487 A; 338 C; 362 G; 340 T; 0 other;
AB188933 Length: 1527 December 7, 2004 09:04 Type: N Check: 8195 ..
1 accgatggaa tatctcggca tttcatgagt gagtatggag ctcttgaggc
51 agttcaccat caaaacacca gcgacatgag caaattcctc aagcttaagg
101 gcaaatggaa taaaacgcta atcacgcgag atgtgttggt gctttgtgga
151 gttcttggag gtggattgtg gatggttatt cagcacctgc gatcaaagat
201 ttccgaaccc gtaacccacg aagcgaaagg taagaggcaa aggcagaaac
251 taaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga
301 gatgatgata ccatagagca tttcttcggt gatgcctaca caaagaaagg
351 gaagagcaag ggtaggacac gtggtatcgg acacaaaaac aggaagttca
401 tcaacatgta tgggtttgat cctgaggatt tctctgcagt tcgtttcgtg
451 gatccactca caggagcgac gttggacgac aacccgctca cagacatcac
501 ccttgtgcaa gagcactttg gtaacataag aatggactta ctcggggagg
551 atgagctgga cccaaatgaa atacgtgtga ataagacaat tcaggcctac
601 tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca
651 catacctctc aaggtgtgtg accttcacgc aaccattgct ggattcccag
701 agcgagaaaa tgaactgaga cagactggaa aggctcagcc cattaacata
751 gacgaagtgc caagagctaa taacgaactc gtcccagtgg accacgagag
801 taactccatg ttcagagggt tgcgtgacta caacccaata tcaaacaaca
851 tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga
901 gtcggtttcg gaccactcat attaacgaac cgacatctct ttgagcggaa
951 taacggtgaa ctcgtaataa aatcacgaca tggtgagttc gtgattaaaa
1001 acacaactca gctacatttg ctaccgattc cagacagaga tcttctgcta
1051 atccggttac caaaggacgt cccacctttt ccacagaaat tgggtttcag
1101 gcagcctgag aagggtgaac gaatttgcat ggtggggtcc aatttccaaa
1151 ccaggagcat aacgagtata gtctctgaga ctagcacaat aatgccagtg
1201 gaaaacagtc agttttggaa acactggatt agcactaaag acggccaatg
1251 tggaagtcca atggtgagca cgaaagacgg gaaaatactt ggattacaca
1301 gcctagcaaa cttccagaac tccatcaatt actttgctgc tttcccagat
1351 gattttgtcg agaagtatct tcacaccatt gaagcacacg agtgggtcaa
1401 gcactggaag tataacacta gcgccatcag ttggggctct ctgaatatac
1451 aagcatcgca accatcaggc ttgttcaaag taagcaagct aatctcagac
1501 cttgacagca cggcagtcta cgcacaa