Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR32.

ACC No: AB188934

Dated: 2004-12-03 | Length: 1527 | CRC: 761571948

                !!NA_SEQUENCE 1.0
ID   AB188934   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB188934;
XX
SV   AB188934.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR32.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="GBR32"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689R2"
FT                   /db_xref="UniProt/TrEMBL:Q689R2"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38753.1"
FT                   /translation="TDGISRHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT                   LVLCGVLGGGLWMVIQHLRSKMSEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT                   TDITLVQEHFGNIRMDLLGENELDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 487 A; 342 C; 364 G; 334 T; 0 other;

AB188934  Length: 1527  December 7, 2004 09:04  Type: N  Check: 5607  ..

       1  actgatggaa tatctcggca ttttatgagt gagtatggag ctctcgaggc
      51  agttcaccat caaaacacca gcgacatgag caaattcctc aagcttaagg
     101  gcaaatggaa taaaacgcta attacgcgag atgtgttggt gctttgtgga
     151  gttcttggag gtggattgtg gatggttatt cagcacctgc ggtcaaagat
     201  gtccgaaccc gtaacccacg aagcgaaagg caagaggcaa aggcagaaac
     251  taaaatttcg caatgcccga gacaacaaga tgggtagaga agtgtacgga
     301  gatgatgata ccatagagca tttcttcggt gatgcctaca caaagaaagg
     351  gaagagcaag ggcaggacac gtggtatcgg acacaagaac aggaagttca
     401  tcaacatgta tgggtttgat cctgaagatt tctctgcagt tcgtttcgtg
     451  gatccactca caggagcgac gttggacgac aacccgctca cagacatcac
     501  ccttgtgcaa gagcactttg gtaacataag aatggactta ctcggggaga
     551  atgagctgga tccaaatgaa atacgtgtga ataagacaat tcaggcctac
     601  tacatgaaca ataaaacagg caaggctttg aaggtggatc tgacaccaca
     651  catacctctc aaggtgtgcg atcttcacgc aaccattgct ggattcccag
     701  agcgagaaaa tgaactgagg cagactggaa aggctcagcc cattaacata
     751  gacgaagtgc caagagctaa taacgagctc gtcccagtgg accacgagag
     801  taactccatg ttcagagggt tgcgtgacta caacccaata tcaaacaaca
     851  tttgtcacct cacaaatgtt tcagatggag catcaaactc gttatatgga
     901  gtcggttttg gaccactcat attaacgaac cgacacctct ttgagcggaa
     951  taacggtgaa ctcgtaataa aatcacgaca tggcgagttc gtgattaaaa
    1001  acacaactca gctacatttg ctaccgattc cagacagaga tcttctgcta
    1051  atccggttac caaaggacgt cccacccttt ccacagaaat taggtttcag
    1101  gcaacctgag aagggtgaac gaatttgcat ggtggggtcc aatttccaaa
    1151  ccaagagcat aacgagcata gtctctgaga ctagcacaat aatgccagtg
    1201  gagaacagtc agttttggaa acactggatc agcacgaaag acggccaatg
    1251  cggaagtcca atggtgagca cgaaagacgg gaaaatactc ggattacaca
    1301  gcctagcgaa cttccagaac tccatcaatt actttgctgc tttcccagat
    1351  gattttgccg agaagtatct tcataccatt gaagcacacg aatgggtcaa
    1401  gcattggaag tataacacta gtgccatcag ttggggctct ttgaatatac
    1451  aagcatcgca accgtcaggc ttgttcaaag taagcaagct aatctcagac
    1501  ctcgacagca cggcagtcta cgcacaa