Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR38.
ACC No: AB188936
Dated: 2004-12-03 | Length: 1527 | CRC: -1406183933
!!NA_SEQUENCE 1.0
ID AB188936 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB188936;
XX
SV AB188936.1
XX
DT 27-AUG-2004 (Rel. 81, Created)
DT 03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR38.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA Ohshima K.;
RT "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT in West and East Eurasia";
RL Virology 330:408-423(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="GBR38"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="GOA:Q689R0"
FT /db_xref="UniProt/TrEMBL:Q689R0"
FT /product="polyprotein"
FT /protein_id="BAD38755.1"
FT /translation="TDGISRHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT LVLCGVLGGGLWMVIQHLRSRISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATMDDNPL
FT TDITLVQEHFGNIRMDLLGEDELDPNETRVNKTIQAYYMNNKTGKALKVDLTPHMPLKV
FT CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT TIEAHEWVKHWKYNTGAISWGSLNIQASQPSGLFKVGKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 485 A; 344 C; 368 G; 330 T; 0 other;
AB188936 Length: 1527 December 7, 2004 09:04 Type: N Check: 7458 ..
1 accgatggaa tatctcggca tttcatgagt gagtatggag ctcttgaggc
51 agttcaccat caaaacacca gcgacatgag caaattcctc aagcttaagg
101 gcaaatggaa taaaacgcta attacgcgag atgtgttggt actttgtgga
151 gttcttggag gtggattgtg gatggttatt cagcacctgc ggtcaagaat
201 ttccgaacct gtaacccacg aagcgaaagg caagaggcaa aggcagaaac
251 tgaagtttcg caatgcccga gataacaaga tgggtagaga agtgtacgga
301 gatgacgata ccatagagca tttcttcggt gatgcctaca caaagaaagg
351 gaagagcaag ggtaggacac gtggcatcgg acacaaaaac aggaagttca
401 tcaacatgta tgggtttgat cctgaagatt tctctgcagt tcgtttcgta
451 gatccactca caggagcgac gatggacgac aacccgctca cagacatcac
501 ccttgtgcaa gagcattttg gtaacataag aatggactta ctcggagagg
551 atgagctaga tccaaatgaa acacgcgtga ataagacaat tcaggcctac
601 tacatgaaca ataaaacagg taaggctttg aaggtggacc tgacaccaca
651 catgcccctc aaggtgtgtg accttcacgc aaccattgct ggattcccag
701 agcgagagaa tgaactgagg cagactggaa aggcccagcc catcaacata
751 gacgaggtgc caagagccaa caacgaactc gtcccagtgg accacgaaag
801 caactccatg ttcagagggt tgcgagacta caacccgatt tcaaacaaca
851 tttgtcatct aacaaatgta tcagatggag catcgaattc attgtatgga
901 gttgggtttg gaccactcat actaacgaat cgacaccttt tcgaacggaa
951 caatggtgag cttgtgataa aatctcgaca tggtgagttc gtgatcaaga
1001 acacaactca gctacactta ttgccgattc cggacagaga tctcctgtta
1051 atcaggctac cgaaagatgt tccacccttt ccgcagaaac taggtttcag
1101 gcaacctgaa aagggtgaac gaatttgcat ggtggggtcc aatttccaaa
1151 ccaagagcat aacgagcata gtctctgaga ctagcacaat aatgccagtg
1201 gagaacagtc agttttggaa acactggatt agcactaaag acggccaatg
1251 cggaagtcca atggtgagca caaaggacgg aaaaatactc ggattgcaca
1301 gcctagcaaa cttccagaac tccatcaatt actttgctgc tttcccagat
1351 gattttgccg agaagtacct tcataccatt gaagcacacg aatgggtcaa
1401 gcactggaag tataacactg gcgccatcag ttggggctct ttgaatatac
1451 aagcatcgca accgtcaggc ttgtttaaag taggcaagct aatctcagac
1501 ctcgacagca cggcagtcta cgcacaa