Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC6.
ACC No: AB188942
Dated: 2004-12-03 | Length: 1527 | CRC: -1543037298
!!NA_SEQUENCE 1.0
ID AB188942 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB188942;
XX
SV AB188942.1
XX
DT 27-AUG-2004 (Rel. 81, Created)
DT 03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC6.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA Ohshima K.;
RT "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT in West and East Eurasia";
RL Virology 330:408-423(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="GRC6"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="GOA:Q689Q4"
FT /db_xref="UniProt/TrEMBL:Q689Q4"
FT /product="polyprotein"
FT /protein_id="BAD38761.1"
FT /translation="TDGISRHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT LVLCGVLGGGLWMVIQHLRSKMSEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT TDITLVQEHFGNIRMDLLGEDEIDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 486 A; 339 C; 365 G; 337 T; 0 other;
AB188942 Length: 1527 December 7, 2004 09:05 Type: N Check: 5299 ..
1 accgatggga tatctcggca tttcatgagt gagtatggag ctcttgaggc
51 agttcaccat cagaacacca gcgacatgag caagttcctc aagcttaagg
101 gtaaatggaa taaaacgcta attacgcgag atgtgttggt gctttgtgga
151 gttcttggag gtggactgtg gatggttatt caacacctgc ggtcaaagat
201 gtccgaaccc gtaacccacg aagcgaaagg caagaggcaa aggcagaaat
251 taaaatttcg caatgcccga gacaacaaaa tgggtagaga agtgtacggg
301 gatgatgaca ccatagagca tttcttcggt gacgcctaca caaagaaagg
351 gaagagcaag ggtaggacac gtggtatcgg acacaaaaac aggaagttca
401 tcaacatgta tgggtttgat cctgaggatt tctctgcagt tcgtttcgtg
451 gatccactca caggagcgac gttggacgac aacccgctca cagacatcac
501 ccttgtgcaa gagcactttg gtaacataag aatggactta ctcggagaag
551 atgagataga cccaaatgaa atacgtgtga ataagacaat tcaggcctac
601 tacatgaaca ataagacagg caaggctttg aaggtggatc tgacaccaca
651 catacctctc aaggtgtgtg atcttcacgc aaccattgct ggattcccag
701 agcgagaaaa cgaactgagg cagactggaa aggctcagcc cattaacata
751 gacgaagtgc caagagctaa taacgaactc gttccagtgg accacgagag
801 taactccatg ttcagagggt tgcgtgacta caacccaata tcaaacaaca
851 tttgtcatct cacaaatgtt tcagatggag catcaaactc gttatatgga
901 gttggtttcg gaccgctcat attaacgaac cgacacctct ttgagcggaa
951 taacggtgaa ctcgtaataa aatcacgaca tggtgagttc gtgattaaaa
1001 acacaactca gctacatttg ctaccgattc cagacagaga tcttctgcta
1051 attcggttac caaaggatgt cccacccttt ccacaaaaat tgggtttcag
1101 gcaacctgag aagggtgaac gaatttgcat ggtggggtcc aatttccaaa
1151 ccaagagcat aacgagcata gtctctgaga ctagcacaat aatgccagtg
1201 gagaacagtc agttttggaa acactggatt agcactaaag acggccaatg
1251 cggaagtcca atggtgagca cgaaggacgg gaaaatactc ggattacaca
1301 gcctagcgaa cttccagaac tccatcaatt actttgctgc tttcccagat
1351 gattttgccg agaagtacct tcacaccatt gaagcacacg aatgggtcaa
1401 gcactggaag tataacacta gcgccatcag ttggggctct ttgaatatac
1451 aagcatcgca accgtcaggc ttgttcaaag taagtaagct aatctcagac
1501 ctcgatagca cggcagtcta cgcacaa