Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC17.
ACC No: AB188944
Dated: 2004-12-03 | Length: 1527 | CRC: 1225862749
!!NA_SEQUENCE 1.0
ID AB188944 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB188944;
XX
SV AB188944.1
XX
DT 27-AUG-2004 (Rel. 81, Created)
DT 03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC17.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA Ohshima K.;
RT "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT in West and East Eurasia";
RL Virology 330:408-423(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="GRC17"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="GOA:Q689Q2"
FT /db_xref="UniProt/TrEMBL:Q689Q2"
FT /product="polyprotein"
FT /protein_id="BAD38763.1"
FT /translation="TDGISRHFMSEYGALEAVHHQNTSDMSKFLKLKGKWNKTLITRDV
FT LVLCGVLGGGLWMVIQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPL
FT TDITLVQEHFGNIRMDLLGEDELDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPERENELRQTGKAQPINIDEVPRANNELVPVDHESNSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 488 A; 344 C; 361 G; 334 T; 0 other;
AB188944 Length: 1527 December 7, 2004 09:05 Type: N Check: 3624 ..
1 accgatggaa tatctcggca tttcatgagt gagtatggag ctcttgaggc
51 agttcaccat caaaacacca gtgacatgag caagttcctc aagcttaagg
101 gcaaatggaa caaaacgcta atcacgcgag atgtgttggt gctttgtgga
151 gttcttggag gtggattgtg gatggttatt cagcacctgc ggtcaaagat
201 ttccgaaccc gtaacccacg aagcgaaggg caagagacaa aggcagaaac
251 taaagtttcg caatgcccga gacaacaaga tgggtagaga agtgtatgga
301 gatgatgata ccatagagca cttcttcggc gacgcctaca caaagaaagg
351 gaagagcaag ggcaggacac gtggcatcgg acacaaaaac aggaagttca
401 tcaacatgta tgggtttgat cctgaagatt tctctgcagt tcgtttcgtg
451 gatccactca caggagcgac gttggacgac aacccgctca cagacatcac
501 ccttgtgcaa gagcactttg gtaacataag aatggactta ctcggggaag
551 atgagctgga tccaaatgaa atacgcgtga ataaaacaat tcaggcctac
601 tacatgaaca ataaaacagg caaggctttg aaggtggacc ttacaccaca
651 catacctctc aaggtgtgtg atcttcacgc aaccattgct ggattcccag
701 agcgagaaaa cgaactgagg cagactggaa aggctcagcc cattaacata
751 gacgaagtgc caagagctaa taacgaactc gtcccagtag accacgagag
801 taactccatg ttcagagggt tgcgtgacta caacccaata tcaaacaaca
851 tttgccatct cacaaatgtt tcagatggag catcaaactc gttgtatgga
901 gtcggtttcg gaccactcat attaacgaac cgacacctct ttgagcggaa
951 taacggtgaa cttgtaataa aatcacgaca tggtgagttc gtgattaaaa
1001 acacaactca gctacatttg ctaccgattc cagacagaga tcttctgcta
1051 atccggttac caaaggacgt cccacccttt ccacagaaat tgggtttcag
1101 gcaacctgag aaaggtgaac ggatttgcat ggtgggatcc aatttccaaa
1151 ccaagagcat aacgagtata gtctctgaaa ccagcacaat aatgccagtg
1201 gagaacagtc agttttggaa acactggatt agcacgaaag acggccagtg
1251 cggaagtcca atggtgagca cgaaagacgg gaaaatactt ggattacaca
1301 gcctagcgaa ctttcagaac tccatcaatt actttgctgc tttcccagat
1351 gattttgccg agaagtatct tcataccatt gaagcacacg agtgggtcaa
1401 gcattggaag tataacacta gtgccatcag ttggggctct ttaaatatac
1451 aagcatcgca accgtcaggc ttgttcaaag taagcaagct aatctcagac
1501 ctcgatagca cggcagtcta cgcacaa