Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC44.
ACC No: AB188951
Dated: 2004-12-03 | Length: 1527 | CRC: 1030367088
!!NA_SEQUENCE 1.0
ID AB188951 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB188951;
XX
SV AB188951.1
XX
DT 27-AUG-2004 (Rel. 81, Created)
DT 03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC44.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA Ohshima K.;
RT "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT in West and East Eurasia";
RL Virology 330:408-423(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="GRC44"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="GOA:Q689P5"
FT /db_xref="UniProt/TrEMBL:Q689P5"
FT /product="polyprotein"
FT /protein_id="BAD38770.1"
FT /translation="TDGISRNFMSEYGALEAVHHQSTNDMSKFLKLKGKWNKTLITRDV
FT LVICGVLGGGIWMVLQRLQSGVTESVVHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFVNMYGFDPEDFSAVRFVDPLTGATLDESPF
FT TDITLVQKHFGDIRTDLLEEDEIEPQALQYHKTIQAYYTNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPEREFELRQTGKAQPISIDEVPKANTELVPVDHESSSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFVIRNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTVMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLY
FT TIETHEWVKHWKYNTSGVSWGSLSIQAAQPSGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 503 A; 310 C; 344 G; 370 T; 0 other;
AB188951 Length: 1527 December 7, 2004 09:05 Type: N Check: 6884 ..
1 accgatggga tttctcgaaa ttttatgagt gaatatggag cacttgaagc
51 cgttcaccac caaagcacca acgatatgag taaattcctt aagctcaagg
101 gtaagtggaa caagacacta attacgagag atgtactagt tatttgtgga
151 gtccttggag gtggaatttg gatggttttg cagcgattgc aatctggagt
201 caccgaatcc gtagtacatg aagcaaaagg caaaaggcag agacaaaagt
251 tgaagttccg taacgcccga gacaacaaga tgggcaggga agtttacggg
301 gacgatgata ctatagaaca cttctttgga gacgcctaca cgaagaaggg
351 aaaaagcaaa ggtagaacac gtggtcttgg tcacaagaac agaaaattcg
401 tcaatatgta tggatttgat cctgaagatt tctctgcagt cagattcgta
451 gacccactta caggagcaac attggatgaa agtcctttca cagacatcac
501 tcttgttcag aaacactttg gagatatacg aactgactta cttgaggaag
551 atgaaattga accacaggca ctacaatacc acaagacaat ccaggcctac
601 tacacgaaca ataaaacagg taaagcattg aaggtggact taacaccaca
651 catacctctc aaggtgtgtg atcttcatgc aaccattgct ggttttccag
701 aacgtgaatt cgaactgagg cagactggaa aagctcaacc cataagtata
751 gacgaagtgc ctaaagctaa taccgagtta gtccctgttg accacgaaag
801 tagttccatg ttcagaggat tgcgcgatta caacccaata tcaaataaca
851 tttgtcatct tacaaatgtt tcagatgggg catcaaactc attgtatgga
901 gttggttttg gaccactcat attaacgaat cggcatcttt ttgaacgtaa
951 caatggagag ctcctgataa agtcgcgaca cggtgaattt gtgattagaa
1001 atacaacgca actccatttg ttgccaattc cagacaggga cttgttgcta
1051 attcgcctac cgaaggacat cccacccttc cctcaaaagc taggattcag
1101 gcaacccgaa aagggagaaa gaatttgcat ggtgggatcc aacttccaaa
1151 caaagagcat taccagtgta gtctcagaaa caagcacagt gatgccagta
1201 gagaatagtc aattttggaa gcattggatt agtaccaaag acggtcaatg
1251 tggtagtccg atggtaagta caaaagatgg aaagatactc gggctgcata
1301 gtctggcaaa ttttcaaaac tccatcaatt atttcgctgc cttcccagat
1351 gatttcgctg agaaatacct gtacacgatt gagacacatg aatgggtcaa
1401 acattggaaa tacaacacca gtggagttag ttggggctct ttgagtatcc
1451 aagcagcaca accatcaggt ttattcaagg tcagcaagct gatttcagat
1501 cttgatagca cggcagttta tgcgcaa