Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC45.

ACC No: AB188952

Dated: 2004-12-03 | Length: 1527 | CRC: -933572698

                !!NA_SEQUENCE 1.0
ID   AB188952   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB188952;
XX
SV   AB188952.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC45.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="GRC45"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689P4"
FT                   /db_xref="UniProt/TrEMBL:Q689P4"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38771.1"
FT                   /translation="TDGISRSFMREYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGVWMILQSLKSGVTESVTHEAKGKRQRQKLKFRNARDSKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFVNMYGFDPEDFSAVRFVDPLTGATLDESPF
FT                   TDITLVQKHFGDIRTDLLEDDEIEPQALQSHKTIHAYYTNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERELELRQTGKAQPISIDEVPKANTELVPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIRNTTQLQL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEIHDWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 502 A; 315 C; 345 G; 365 T; 0 other;

AB188952  Length: 1527  December 7, 2004 09:05  Type: N  Check: 7348  ..

       1  actgatggta tttctcggag tttcatgcgc gagtatggag cacttgaagc
      51  agttcaccac caaaatacca acgatatgag caaattcctt aaacttaagg
     101  gcaaatggaa caaaacacta atcacaagag atgtgttggt tatttgtgga
     151  gttcttggag gtggagtttg gatgatcttg cagagcctga agtctggagt
     201  cactgaatcc gtaacacatg aagcgaaagg caagaggcaa agacagaaac
     251  tgaagttccg caacgctcga gacagcaaaa tgggtagaga agtctatggg
     301  gatgatgaca ctatagaaca cttctttgga gatgcctaca caaagaaggg
     351  aaaaagcaaa ggtaggacac gtggtattgg ccacaaaaac agaaaattcg
     401  tcaatatgta tggatttgat cctgaagatt tctctgcagt cagattcgta
     451  gacccactta caggagcaac attggatgaa agtcctttta cagatatcac
     501  tcttgttcag aaacattttg gggatatacg caccgacttg cttgaggatg
     551  acgaaattga accacaggca ttacaatccc ataaaacaat ccatgcttac
     601  tacacgaaca ataaaacagg taaggccttg aaagtggact taacaccaca
     651  catacctctc aaagtatgcg atcttcatgc caccatcgct ggtttcccag
     701  aacgagaact cgagttgagg cagactggaa aggctcaacc cataagcata
     751  gatgaagtgc ctaaagctaa caccgaattg gtcccggtcg accatgaaag
     801  taattccatg ttcagaggat tgcgcgatta caacccaata tcaaacaaca
     851  tttgtcatct cacaaatgta tcagatgggg cgtcgaactc gttgtatggg
     901  gttggttttg gaccactcat attaacaaat cggcatcttt ttgaacggaa
     951  caatggagag cttataataa aatcgcgaca cggcgaattt gtgatcagga
    1001  atactacgca actccagctg ctgccaatcc cggacaggga tctattgcta
    1051  atccgcttac caaaggacat tccacccttc ccgcaaaaac taggattcag
    1101  acaacccgaa aagggagaga gaatctgcat ggtaggatcc aattttcaaa
    1151  cgaagagcat taccagcgtg gtttcagaga ctagtacaat aatgccagtg
    1201  gagaatagtc aattttggaa gcattggatt agcacaaaag atggtcaatg
    1251  tggtagccca atggtgagca caaaggatgg aaagatactt ggacttcaca
    1301  gtttagccaa tttccaaaac tccatcaatt atttcgctgc tttcccagat
    1351  gattttgccg agaaatacct tcatacgatc gagatacatg attgggttaa
    1401  gcattggaaa tataacacta gtgggattag ttggggctct ttgaacattc
    1451  aagcagcaca gccagcaggt ctgttcaagg tgagcaagtt aatatcagat
    1501  ctcgacagca cagcagttta tgcgcaa