Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA5.

ACC No: AB188955

Dated: 2004-12-03 | Length: 1527 | CRC: -130212198

                !!NA_SEQUENCE 1.0
ID   AB188955   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB188955;
XX
SV   AB188955.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA5.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ITA5"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689P1"
FT                   /db_xref="UniProt/TrEMBL:Q689P1"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38774.1"
FT                   /translation="TDGISRSFMSEYGALEAVHHQSTNDMSKFLKLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMILQRLQSGITEPVIHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHYFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDESPF
FT                   TDITLVQKHFGDIRTDLLEEDEIEPQALQFHKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPEREFELRQTGKAQPISISEVPKANAELVPVDHESSSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFVIRNTTQLHL
FT                   LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVISETSTVMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIETHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 498 A; 331 C; 353 G; 345 T; 0 other;

AB188955  Length: 1527  December 7, 2004 09:05  Type: N  Check: 5829  ..

       1  actgatggaa tttcccggag ttttatgagt gagtatggag cacttgaggc
      51  agtccatcat cagagcacca atgacatgag taagttcctc aagcttaagg
     101  gcaagtggaa taagacgcta atcacaaggg acgtgttggt tatttgtgga
     151  gtccttggag gcgggatttg gatgatccta cagcgtttgc aatctgggat
     201  tactgaaccc gtgatacatg aagcaaaagg caagaggcag agacagaagc
     251  taaaattccg caatgctcgg gacaacaaaa tgggcagaga ggtttatggg
     301  gatgacgaca ctatagagca ctactttgga gatgcttaca caaagaaagg
     351  gaagagcaaa ggtagaactc gtggtctcgg tcacaagaac agaaaattca
     401  tcaatatgta tggatttgac cctgaagatt tctctgcagt caggttcgtg
     451  gatccactca caggagcaac gctggatgag agccctttta cggacatcac
     501  cctcgttcag aaacactttg gagatatacg aaccgactta ctcgaggaag
     551  atgagataga accacaggcg ctacaattcc ataaaacgat ccaggcatac
     601  tacatgaaca ataaaacagg taaagccttg aaggttgact taacaccaca
     651  catacctctc aaggtgtgcg accttcacgc aaccattgct ggatttccag
     701  aaagagagtt cgagctgaga caaactggaa aagcccaacc cataagcata
     751  agtgaagtgc ctaaagctaa tgccgagttg gttcccgtcg accatgagag
     801  tagctccatg ttcagaggat tgcgcgacta taacccaata tcaaacaaca
     851  tttgtcatct tacaaatgtt tcagatggag cgtcaaactc actgtacgga
     901  gttggtttcg ggccactcat attaacgaat cggcaccttt ttgaacggaa
     951  caacggagag ctcttgataa agtcgcgaca tggtgaattt gtgatcagaa
    1001  acacaacgca actccattta ctgccaattc cagacagaga cctattgcta
    1051  attcgactac caaaagatat cccacccttc cctcaaaagc taggattcag
    1101  acaacctgaa aagggagaaa gaatttgcat ggtaggatcc aactttcaaa
    1151  caaaaagtat caccagtgtg atctcagaaa caagtacagt gatgccagtg
    1201  gagaacagtc aattctggaa gcattggatt agcaccaaag acggtcaatg
    1251  tggtagcccg atggtgagta cgaaagatgg taagatactc ggattgcaca
    1301  gtttagcaaa ctttcaaaac tccatcaatt actttgccgc cttcccggat
    1351  gacttcgccg aaaaatacct tcacacgatt gagacacatg aatgggtcaa
    1401  gcattggaaa tacaacacta gtggaattag ttggggctct ttaaatatcc
    1451  aagcagcgca accagcaggt cttttcaaag tgagcaagct gatatcagac
    1501  ctcgatagca cggcagttta cgcacaa