Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA9.
ACC No: AB188958
Dated: 2004-12-03 | Length: 1527 | CRC: 1770708568
!!NA_SEQUENCE 1.0
ID AB188958 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB188958;
XX
SV AB188958.1
XX
DT 27-AUG-2004 (Rel. 81, Created)
DT 03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA9.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA Ohshima K.;
RT "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT in West and East Eurasia";
RL Virology 330:408-423(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="ITA9"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="GOA:Q689N8"
FT /db_xref="UniProt/TrEMBL:Q689N8"
FT /product="polyprotein"
FT /protein_id="BAD38777.1"
FT /translation="SDGISRSFMSDYGALEAVHHQSTNEMSKFLKLKGKWNRTLITRDV
FT LVICGVLGGGVWMIIQHLQSGITEPVTHEAKGKRQRQKLKFRNARDTKMGREVYGDDDT
FT IEHYFGEAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDENPF
FT TDITLVQKHFGDIRTDLLAQEELEPESLRFHKTIQAYYTNNKTGKALKVDLTPHMPLKV
FT CDLHATIAGFPEREFELRQTGKAQPISIDEVPKANTEVVSVDHESSSMFRGLRDYNPIS
FT NNICHLTNNSDGASNSLYGVGFGPLILTNRHLFERNNGELLIKSRHGEFVIRNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPEKGERICMVGSNFQTKSITSVVSETSTVMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT TFETHEWVKHWKYNTSGISWGSLNIQAAQPAGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 500 A; 317 C; 349 G; 361 T; 0 other;
AB188958 Length: 1527 December 7, 2004 09:05 Type: N Check: 1151 ..
1 tctgacggaa tttcccgaag ttttatgagt gattatggag cgctcgaagc
51 agtacatcat caaagtacca atgaaatgag caagttcctt aaactgaaag
101 gtaaatggaa cagaacatta atcacaagag acgtattggt catatgcggt
151 gttcttggag gtggagtttg gatgattata cagcatctgc aatctggaat
201 cacagaacct gtaactcatg aagcaaaagg caagaggcaa agacaaaaat
251 tgaagtttcg taatgctcgc gataccaaaa tgggtaggga agtctacggg
301 gatgacgaca ccatagaaca ctatttcgga gaagcttaca caaagaaagg
351 gaagagcaag ggtagaacgc gtggcctcgg ccataaaaac agaaagttca
401 tcaacatgta tggatttgac cctgaagatt tctccgcagt cagattcgtg
451 gacccactca caggagctac attggatgag aacccattca cagatatcac
501 ccttgtgcaa aaacactttg gagatatacg aactgactta cttgcgcaag
551 aggaactgga gccagaatca ctgcgatttc ataaaacaat ccaggcctac
601 tacacgaaca acaagacggg taaagctttg aaagtggatt taactccaca
651 catgcctctc aaggtatgcg atcttcatgc aactattgct ggttttccgg
701 aacgggaatt tgaattgagg caaactggga aagctcagcc tataagcata
751 gacgaagtgc caaaggctaa cactgaggta gtctcagttg atcacgaaag
801 cagttcaatg tttagaggtt tgcgtgatta caacccaata tcaaacaata
851 tttgtcatct cacgaacaac tcagatggtg cgtcaaactc attgtatgga
901 gttggttttg ggccactcat actaacaaat cgacaccttt ttgaacgaaa
951 caacggggag ttattgataa aatcgcgaca tggtgagttt gtgatcagaa
1001 acacaacgca acttcatctt ctgccaattc cagacagaga tctgctgcta
1051 attcgcttac cgaaggacat cccacctttt ccccaaaaat tggggttcag
1101 acaacctgag aagggggaga ggatttgtat ggtgggatct aatttccaga
1151 cgaagagcat tactagcgtg gtctcagaga ctagcacagt tatgccagtg
1201 gagaacagtc aattttggaa acactggatc agtactaaag atggtcaatg
1251 cggtagccca atggtgagca cgaaggacgg aaagatactt gggttgcata
1301 gtctagccaa tttccaaaac tccatcaact atttcgctgc ctttccagat
1351 gacttcgccg aaaaatatct ccacacattt gagacgcatg aatgggtcaa
1401 acactggaag tacaacacta gcgggatcag ttggggctct ctaaatattc
1451 aagcagcaca gccagcaggt ttattcaaag tgagcaaact aatatcagat
1501 ctcgacagta cagcagttta tgcacaa