Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: POL2.

ACC No: AB188962

Dated: 2004-12-03 | Length: 1527 | CRC: 423682469

                !!NA_SEQUENCE 1.0
ID   AB188962   standard; genomic RNA; VRL; 1527 BP.
XX
AC   AB188962;
XX
SV   AB188962.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: POL2.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1527
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1527
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="POL2"
FT   CDS             <1. .>1527
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689N4"
FT                   /db_xref="UniProt/TrEMBL:Q689N4"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38781.1"
FT                   /translation="TDGISRSFMRDYGALEAVHHQSTNEMSKFLQLKGKWNKTLITRDV
FT                   LVICGVLGGGIWMVVQHFRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT                   IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT                   TDITLVQKHFGDIRMDLLGEDELDPNEIRVNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT                   CDLHATIAGFPERENELRQTGKAQPISIDEVPRANNELIPVDHESNSMFRGLRDYNPIS
FT                   NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT                   LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT                   VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT                   TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT   mat_peptide     <1. .63
FT                   /gene="CI"
FT                   /product="CI protein"
FT   mat_peptide     64. .222
FT                   /gene="6K2"
FT                   /product="6K2 protein"
FT   mat_peptide     223. .798
FT                   /gene="NIa-VPg"
FT                   /product="NIa-VPg protein"
FT   mat_peptide     799. .>1527
FT                   /gene="NIa-Pro"
FT                   /product="NIa-Pro protein"
XX
SQ   Sequence 1527 BP; 497 A; 337 C; 360 G; 333 T; 0 other;

AB188962  Length: 1527  December 7, 2004 09:05  Type: N  Check: 3078  ..

       1  actgacggaa tatctcggag ctttatgaga gattacggag cactcgaggc
      51  agttcaccat caaagcacta atgaaatgag caagtttcta cagctcaagg
     101  gcaagtggaa caaaacgcta attacgcgag atgtactggt catttgcgga
     151  gtacttggag gaggaatatg gatggttgtc caacacttcc gctcaaaaat
     201  ttctgagccc gtaactcacg aggcgaaagg caagaggcaa agacagaaac
     251  tgaagtttcg caatgcccga gacaacaaaa tgggtaggga agtgtatgga
     301  gacgacgaca ccatagagca tttctttgga gatgcctaca caaagaaagg
     351  aaagagcaaa ggcaggacgc gtggcatcgg gcacaaaaac aggaagttca
     401  ttaacatgta tggctttgat cccgaagatt tctctgcagt taggttcgta
     451  gatccactca caggagcgac actagacgat aacccattca cagacatcac
     501  ccttgtgcaa aagcactttg gtgacataag aatggattta ctcggagagg
     551  atgaactgga cccaaatgag atacgagtga acaagacaat ccaggcatac
     601  tacatgaaca ataaaacagg caaagctttg aaggtcgatc tgacaccaca
     651  catacctctc aaggtgtgtg accttcatgc aaccattgcc ggattcccag
     701  agagagaaaa cgaattgagg cagactggaa aggctcagcc tatcagtata
     751  gatgaagtgc cgagagccaa caacgaactc atcccagtgg accatgagag
     801  caactctatg ttcagagggt tgcgtgacta caacccaatc tcgaacaaca
     851  tttgtcacct tacaaatgtg tcagatggag catcaaactc gttatatgga
     901  gtcggtttcg ggccactcat attaacgaac cgacatctct ttgagcggaa
     951  caacggcgag cttgtaataa agtcacgaca tggtgaattt gtgattaaaa
    1001  atacaactca gctacatcta cttccaatac cggacagaga tcttttgcta
    1051  atccgattgc caaaggacgt cccgcctttt ccgcagaaac taggctttag
    1101  acaacctgaa aagggtgagc gaatttgcat ggtaggatcc aatttccaga
    1151  ctaagagcat aacgagtata gtctctgaga ctagtacgat aatgccagtg
    1201  gagaatagtc agttctggaa acactggatt agcactaaag acggccaatg
    1251  cggaagtcca atggtgagca caaaggacgg aaaaatactt ggattacaca
    1301  gcctggcgaa tttccagaac tccatcaatt attttgctgc tttcccagat
    1351  gatttcgccg agaagtatct tcatactatt gaagcacacg agtgggtcaa
    1401  acattggaag tataacacca gcgccatcag ttggggctct ctgaatatac
    1451  aagcgtcgca gccgtcaggc ttgttcaaag taagcaagct aatttcagac
    1501  cttgacagca cggcagtcta cgcacaa