Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: POL4.
ACC No: AB188963
Dated: 2004-12-03 | Length: 1527 | CRC: 2044861060
!!NA_SEQUENCE 1.0
ID AB188963 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB188963;
XX
SV AB188963.1
XX
DT 27-AUG-2004 (Rel. 81, Created)
DT 03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: POL4.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA Ohshima K.;
RT "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT in West and East Eurasia";
RL Virology 330:408-423(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="POL4"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="GOA:Q689N3"
FT /db_xref="UniProt/TrEMBL:Q689N3"
FT /product="polyprotein"
FT /protein_id="BAD38782.1"
FT /translation="TDGISRSFMRDYGALEAVHHQSTNEMSKFLQLKGKWNKTLITRDV
FT LVICGVLGGGIWMVVQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKMGREVYGDDDT
FT IEHFFGDAYTKKGKSKGRTRGIGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDDNPF
FT TDITLVQKHFGDIRTDLLGEDELDPNEIRMNKTIQAYYMNNKTGKALKVDLTPHIPLKV
FT CDLHATIAGFPERENELRQTGKAQPISIDEVPRANNELIPVDHESNSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELVIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMP
FT VENSQFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT TIEAHEWVKHWKYNTSAISWGSLNIQASQPSGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 500 A; 345 C; 359 G; 323 T; 0 other;
AB188963 Length: 1527 December 7, 2004 09:05 Type: N Check: 9351 ..
1 actgacggaa tatctcggag ctttatgaga gattacggag cactcgaggc
51 agttcaccat caaagcacta atgaaatgag caagttccta cagctcaagg
101 gcaagtggaa caaaacgcta atcacgcgag atgtgctggt catttgcgga
151 gtacttggag gaggaatatg gatggttgtc caacacttac gctcaaaaat
201 ttctgagccc gtaactcatg aggcgaaagg caagaggcaa agacagaaac
251 tgaagtttcg caatgcccga gacaacaaaa tgggtaggga agtgtatgga
301 gacgacgaca ccatagagca tttctttgga gatgcctaca caaagaaagg
351 aaagagcaaa ggcaggacgc gtggcatcgg gcacaaaaac aggaagttca
401 ttaacatgta tggctttgat cctgaagatt tctctgcagt taggttcgta
451 gatccactca caggagcgac actagacgat aacccattca cagacatcac
501 ccttgtgcaa aagcactttg gtgacataag aacggattta ctcggagagg
551 atgaactgga cccaaatgag atacgaatga acaagacaat ccaggcatac
601 tacatgaaca ataaaacagg caaagctttg aaggtcgatc tgacaccaca
651 catacctctc aaggtgtgtg accttcatgc aaccatagcc ggattcccag
701 agagagaaaa cgaattgagg cagactggaa aggctcagcc tatcagtata
751 gatgaagtgc cgagagccaa caacgaactc atcccagtgg accatgagag
801 caactccatg ttcagagggt tgcgtgacta caacccaatc tcgaacaaca
851 tctgccatct tacaaatgtg tcagatggag catcaaactc gttatatggg
901 gttggtttcg gaccactcat attaacgaac cgacatctct ttgagcggaa
951 caatggcgag cttgtaataa agtcacgaca cggtgagttt gtgattaaaa
1001 acacaactca gctacatcta ctcccaatac cggatagaga ccttttgcta
1051 atccgattgc caaaggatgt cccacccttt ccgcagaaac taggcttcag
1101 acaacctgaa aagggtgagc gaatttgcat ggtaggatcc aatttccaga
1151 ctaagagcat aacgagtata gtctctgaga ctagtacgat aatgccagtg
1201 gagaacagtc agttttggaa acactggatt agcactaaag acggccaatg
1251 cggaagtcca atggtgagca caaaggacgg gaaaatactc ggactacaca
1301 gcctggcgaa tttccagaac tccatcaatt actttgccgc tttcccagat
1351 gattttgctg agaagtatct tcacaccatt gaagcacacg agtgggtcaa
1401 gcactggaag tataacacta gcgccattag ttggggctct ctgaatatac
1451 aagcatcgca accatcaggc ttgttcaaag taagcaagtt aatctcagac
1501 ctcgacagca cggcagtcta cgcacaa