Sequence of DPV Turnip mosaic virus
Turnip mosaic virus gene for polyprotein, partial cds, isolate: Rn98.
ACC No: AB188969
Dated: 2004-12-03 | Length: 1527 | CRC: 1207355588
!!NA_SEQUENCE 1.0
ID AB188969 standard; genomic RNA; VRL; 1527 BP.
XX
AC AB188969;
XX
SV AB188969.1
XX
DT 27-AUG-2004 (Rel. 81, Created)
DT 03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE Turnip mosaic virus gene for polyprotein, partial cds, isolate: Rn98.
XX
KW .
XX
OS Turnip mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [1]
RP 1-1527
RA Ohshima K.;
RT ;
RL Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN [2]
RA Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA Ohshima K.;
RT "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT in West and East Eurasia";
RL Virology 330:408-423(2004).
XX
FH Key Location/Qualifiers
FH
FT source 1. .1527
FT /db_xref="taxon:12230"
FT /mol_type="genomic RNA"
FT /organism="Turnip mosaic virus"
FT /isolate="Rn98"
FT CDS <1. .>1527
FT /codon_start=1
FT /db_xref="GOA:Q689M7"
FT /db_xref="UniProt/TrEMBL:Q689M7"
FT /product="polyprotein"
FT /protein_id="BAD38788.1"
FT /translation="NDGISRHFMSEYGALEAVHHQNTNDMSKFLKLKGKWNKTLITRDV
FT LVICGVLGGGIWMIFQHLRSKISEPVTHEAKGKRQRQKLKFRNARDNKIGREVFGDDDT
FT IEHFFGDAYTKKGKSKGRTRGLGHKNRKFINMYGFDPEDFSAVRFVDPLTGATLDETPF
FT TDITLIQKHFGDIRMDLLAEDELDPNELRTNRTIQAYYMNNKTGKALKVDLTPHVPFKV
FT CDFHATIAGFPEREDELRQTGKAQPISINEIPKANTELVPVDHESSSMFRGLRDYNPIS
FT NNICHLTNVSDGASNSLYGVGFGPLILTNRHLFERNNGELIIKSRHGEFVIKNTTQLHL
FT LPIPDRDLLLIRLPKDIPPFPQKLGFRQPERGERICMVGSNFQTKSITSVVSETSTIMP
FT VENSHFWKHWISTKDGQCGSPMVSTKDGKILGLHSLANFQNSINYFAAFPDDFAEKYLH
FT TIEAHEWIKHWKYNTSAISWGSLNIQASQPAGLFKVSKLISDLDSTAVYAQ"
FT mat_peptide <1. .63
FT /gene="CI"
FT /product="CI protein"
FT mat_peptide 64. .222
FT /gene="6K2"
FT /product="6K2 protein"
FT mat_peptide 223. .798
FT /gene="NIa-VPg"
FT /product="NIa-VPg protein"
FT mat_peptide 799. .>1527
FT /gene="NIa-Pro"
FT /product="NIa-Pro protein"
XX
SQ Sequence 1527 BP; 503 A; 336 C; 353 G; 335 T; 0 other;
AB188969 Length: 1527 December 7, 2004 09:05 Type: N Check: 7373 ..
1 aatgacggga tatctcgtca ctttatgagt gaatacggag cgctcgaagc
51 agttcaccat cagaacacca acgacatgag caagttcctg aagctcaaag
101 gcaagtggaa caaaacacta atcacacgag acgtattggt aatctgtgga
151 gttcttgggg gtggaatatg gatgattttc caacacctgc gatcgaagat
201 ttcagaaccc gtaacccatg aagcaaaggg caagagacaa agacagaagc
251 tgaagtttcg caacgcccgg gacaataaga tagggagaga ggtcttcgga
301 gatgatgaca ccatagaaca cttctttggg gatgcctaca caaagaaggg
351 aaagagtaaa ggcagaacgc gtggtcttgg tcataagaac aggaaattca
401 tcaacatgta tgggtttgat cctgaggatt tctcagcagt taggtttgtg
451 gacccattga caggagccac attagatgag actccattca ctgatatcac
501 tcttatacaa aagcattttg gtgacatccg gatggattta ctcgcagagg
551 acgaactaga cccaaatgag ttgcgcacga atagaacgat ccaggcctac
601 tacatgaata ataaaacagg caaggcgcta aaggtggacc tcacaccgca
651 cgtaccattc aaggtatgtg acttccacgc aaccattgct ggatttccgg
701 aaagggaaga cgaactgaga caaactggaa aagctcagcc aataagcata
751 aacgagatac ctaaggccaa caccgagcta gttccagttg accacgaaag
801 cagctccatg ttcagagggt tacgtgacta taacccgata tccaataaca
851 tttgtcacct gacaaatgta tcagacggag catcaaactc gttgtatggt
901 gttggtttcg gaccactcat actaacaaac cgacatctct ttgaacggaa
951 caatggtgag ctaattatta aatctcgaca tggcgagttc gtgatcaaga
1001 acacgactca gctgcatttg ctaccaattc cggatagaga tttattgtta
1051 atccgactac cgaaagacat tccacctttc ccacagaaat taggatttag
1101 acaacctgaa agaggtgaga ggatttgtat ggtaggatct aacttccaaa
1151 ccaaaagcat cacgagcgtg gtgtctgaga ctagcacgat catgccagtg
1201 gagaacagtc acttttggaa gcactggatt agcaccaaag atggacaatg
1251 tggaagcccg atggtgagca cgaaagatgg aaagatacta gggttgcaca
1301 gcctagcgaa ttttcagaac tccatcaact attttgccgc cttcccagat
1351 gattttgcag aaaaatatct ccacaccatc gaagcacatg agtggataaa
1401 acactggaaa tataacacta gtgcgattag ttggggctcc ctaaatatac
1451 aagcttcgca accagcgggc ttattcaaag tgagcaaact catatcagac
1501 ctcgacagca cagcagtgta cgcacaa