Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: AllA.

ACC No: AB188970

Dated: 2004-12-03 | Length: 861 | CRC: 355964631

                !!NA_SEQUENCE 1.0
ID   AB188970   standard; genomic RNA; VRL; 861 BP.
XX
AC   AB188970;
XX
SV   AB188970.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: AllA.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-861
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .861
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="AllA"
FT   CDS             <1. .>861
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689M6"
FT                   /db_xref="UniProt/TrEMBL:Q689M6"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38789.1"
FT                   /translation="AGETLDAGLTEEQKQAEKERKEKEKAEKEREKQKQLALKKGKGSA
FT                   QEDGRDKEVNAGTSGTFSVPRLKSLASKMRVPKYEGKLALNLDHLILYTPEQTDLSNAR
FT                   STQKQFNTWFEGVMADYELTEGKMQIILNGLMVWCIENGTSPNINGMWVMMDGEDQVEF
FT                   PIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFDF
FT                   YEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHNL
FT                   LGVKGL"
FT   mat_peptide     <1. .>861
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 861 BP; 288 A; 165 C; 224 G; 184 T; 0 other;

AB188970  Length: 861  December 7, 2004 09:04  Type: N  Check: 3248  ..

       1  gccggtgaaa cgcttgacgc tggtcttaca gaagagcaga aacaagcaga
      51  gaaagaaaga aaggaaaagg agaaagcgga aaaggagcga gagaaacaga
     101  agcagttggc actcaagaaa ggcaaaggct cagcgcaaga agatggacga
     151  gataaggaag tcaatgccgg aacttctgga acttttagtg tgcctaggct
     201  taaaagcctg gcaagcaaaa tgagagttcc gaagtatgag ggaaagttag
     251  ctctcaacct cgatcatttg attttgtata ctccagagca aacggatcta
     301  tctaatgcgc gctcaacgca aaagcagttc aatacatggt ttgagggtgt
     351  catggccgac tatgaattaa cagagggtaa aatgcaaata atactcaatg
     401  gtttaatggt ctggtgcatt gagaatggaa cttccccgaa tataaacgga
     451  atgtgggtga tgatggatgg tgaggatcag gtggaattcc cgattaaacc
     501  gctcatcgat cacgccaaac ctacatttag gcaaataatg gcccatttca
     551  gtgacgtcgc tgaagcgtac attgaaaagc gtaaccaaga ccgaccatac
     601  atgccacgat atggtcttca gcgcaattta accgacatga gcttagctcg
     651  ttacgcattt gatttctatg aaatgacttc tagaactccg atacgtgcga
     701  gagaggcaca catccagatg aaagcagcag cactgcgtgg cgcaaataat
     751  aatttgttcg gattggatgg taacgttggt acaacggtag agaacacgga
     801  aagacacacg accgaggacg ttaatcggaa catgcataat ctacttggcg
     851  ttaagggatt g