Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CZE4.

ACC No: AB188972

Dated: 2004-12-03 | Length: 864 | CRC: -268307570

                !!NA_SEQUENCE 1.0
ID   AB188972   standard; genomic RNA; VRL; 864 BP.
XX
AC   AB188972;
XX
SV   AB188972.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CZE4.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CZE4"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689M4"
FT                   /db_xref="UniProt/TrEMBL:Q689M4"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38791.1"
FT                   /translation="AGETLDAGLTEEQKQAEKEKKEREKAEKERERQRQLTLKKGKDVA
FT                   QEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVQGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 283 A; 181 C; 235 G; 165 T; 0 other;

AB188972  Length: 864  December 7, 2004 09:04  Type: N  Check: 7925  ..

       1  gcaggcgaaa cgcttgatgc ggggctgacg gaagagcaaa agcaggcaga
      51  gaaggagaag aaagagagag agaaggcaga aaaggagcga gagaggcaaa
     101  ggcagctgac actcaagaaa ggcaaagatg tcgcacaaga agagggaaaa
     151  cgcgacaagg aagttaacgc tggaacctct gggactttca gtgtacccag
     201  actcaagagt ctgacaagca agatgcgcgt accaagatat gagaaaagag
     251  tggctctaaa cctcgatcat ttaatcctgt atacgccaga gcagacagat
     301  ctgtccaata cacgttcgac gcggaagcag ttcgacacat ggtttgaagg
     351  cgttatggct gattatgaac taacggagga caaaatgcaa atcattctca
     401  atggtttaat ggtctggtgc attgagaacg gaacctcccc gaacattaac
     451  ggaatgtggg tgatgatgga cggcgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcaaata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcggtacgca tttgacttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tgggaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttcaggg gtta