Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: CZE18.

ACC No: AB188975

Dated: 2004-12-03 | Length: 864 | CRC: -926180911

                !!NA_SEQUENCE 1.0
ID   AB188975   standard; genomic RNA; VRL; 864 BP.
XX
AC   AB188975;
XX
SV   AB188975.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: CZE18.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="CZE18"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689M1"
FT                   /db_xref="UniProt/TrEMBL:Q689M1"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38794.1"
FT                   /translation="AGETLDAGLTEEQKQAEKEKKEREKAEKERERQKQLALKKGKDVA
FT                   QEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPKYEQRLALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 281 A; 176 C; 237 G; 170 T; 0 other;

 AB188975  Length: 864  December 7, 2004 09:04  Type: N  Check: 788  ..

       1  gcaggcgaaa cgcttgatgc ggggttgacg gaagagcaaa agcaagcaga
      51  gaaggagaag aaggaaagag aaaaagcaga gaaagaacga gagaggcaga
     101  aacagctagc gctcaagaaa ggcaaggacg ttgcacaaga agagggaaag
     151  cgtgacaagg aagtgaatgc tggaacttct ggtactttta gtgtgcctag
     201  gctaaaaagt ttgacaagca agatgcgagt accaaagtac gaacagagac
     251  tggctcttaa ccttgatcat ctaattctgt acacgccgga gcaaacggat
     301  ctttccaaca cgcgttcaac gcggaagcag tttgacacat ggttcgaggg
     351  tgtcatggct gactacgaac tgacggagga taaaatgcaa atcattctca
     401  atggtttgat ggtctggtgc attgagaacg gaacctcccc gaatataaac
     451  ggaatgtggg tgatgatgga cggtgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgatacgca tttgacttct atgagatgac ttctagaact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aacaatttgt tcggcttgga tggaaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgagg acgttaatcg gaacatgcac aacttacttg
     851  gcgttaaggg gttg