Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: DEU7.

ACC No: AB188980

Dated: 2004-12-03 | Length: 864 | CRC: 1077649003

                !!NA_SEQUENCE 1.0
ID   AB188980   standard; genomic RNA; VRL; 864 BP.
XX
AC   AB188980;
XX
SV   AB188980.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: DEU7.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="DEU7"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689L6"
FT                   /db_xref="UniProt/TrEMBL:Q689L6"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38799.1"
FT                   /translation="ADETLDAGLTEEQKQAEKERKEKEKAEKEREKQKQLALKKGKGSA
FT                   QEDGRRDKEVNAGTSGTFSVPRLKSLASKMRVPKYEKKLALNLDHLILYTPEQTDLSNA
FT                   RSTQKQFNTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNTNGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDINRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 287 A; 171 C; 226 G; 180 T; 0 other;

AB188980  Length: 864  December 7, 2004 09:04  Type: N  Check: 4167  ..

       1  gccgatgaaa cgcttgacgc tggtcttaca gaagagcaga aacaagcaga
      51  gaaagaaaga aaggagaagg agaaagcgga aaaggagcga gagaaacaga
     101  agcagttggc actcaagaaa ggcaaaggct cagcgcaaga agatggaaga
     151  cgtgataagg aagtcaatgc cggaacttct ggaactttca gtgtgcctag
     201  gcttaaaagc ctggcaagca aaatgagagt tccgaagtat gagaaaaagt
     251  tagctctcaa cctcgatcat ttgattttgt atactccaga gcaaacggat
     301  ctatctaatg cgcgctcaac gcaaaagcag ttcaatacat ggtttgaggg
     351  tgtcatggcc gactatgaat tgacagagga taaaatgcag ataattctca
     401  atggtttaat ggtctggtgc attgagaacg gaacctctcc gaacacaaac
     451  gggatgtggg tgatgatgga tggtgatgat caggtggaat tcccgattaa
     501  accgctcatc gatcacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt ggctgaagcg tacattgaaa agcgtaacca ggaccgacca
     601  tacatgccac gatatggtct tcagcgtaat ttaaccgaca tgagcttagc
     651  ccgctacgca tttgacttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggattgga tggcaacgtt ggtacaacgg tagagaacac
     801  ggaaagacat acgaccgagg acattaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gttg