Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR50.

ACC No: AB188994

Dated: 2004-12-03 | Length: 864 | CRC: 704154641

                !!NA_SEQUENCE 1.0
ID   AB188994   standard; genomic RNA; VRL; 864 BP.
XX
AC   AB188994;
XX
SV   AB188994.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: GBR50.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="GBR50"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689K2"
FT                   /db_xref="UniProt/TrEMBL:Q689K2"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38813.1"
FT                   /translation="AGETLDAGLTEEQKQAEKEKKERERAEKERERQKQLALKKGKDVA
FT                   QEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVQGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 288 A; 179 C; 233 G; 164 T; 0 other;

AB188994  Length: 864  December 7, 2004 09:04  Type: N  Check: 5344  ..

       1  gcaggcgaaa cgcttgatgc aggtttgaca gaagagcaaa agcaggcaga
      51  gaaggagaag aaagagagag agagggcaga aaaggaacga gagaggcaaa
     101  aacagttggc gctcaagaaa ggcaaggatg ttgcacaaga agaaggaaaa
     151  cgcgacaagg aagtaaacgc tggaacctct ggaactttca gtgtacccag
     201  acttaagagt ctgacaagca agatgcgcgt gccaagatat gagaaaagag
     251  tggctctaaa cctcgatcat ctaatcctat acacgccgga gcagacggat
     301  ctatccaaca cacgttcaac gcgaaagcag tttgacacat ggtttgaagg
     351  tgtaatggct gattacgaac tgacggagga caaaatgcaa atcattctca
     401  atggtttaat ggtctggtgc attgagaacg gaacctcccc gaacataaac
     451  ggaatgtggg tgatgatgga cggcgacgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgatacgca tttgatttct atgaaatgac ttctaggact ccaatacgtg
     701  cgagagaggc gcacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggaaacgtt ggtacaacgg tagagaacac
     801  ggagaggcat acgaccgagg acgttaatcg gaacatgcat aacttactgg
     851  gcgttcaggg gtta