Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC43.

ACC No: AB189007

Dated: 2004-12-03 | Length: 864 | CRC: 1388000992

                !!NA_SEQUENCE 1.0
ID   AB189007   standard; genomic RNA; VRL; 864 BP.
XX
AC   AB189007;
XX
SV   AB189007.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: GRC43.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="GRC43"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689I9"
FT                   /db_xref="UniProt/TrEMBL:Q689I9"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38826.1"
FT                   /translation="ANETLDAGLTEEQKQAEKERKEREKAEKEREKQKQLALKKGKGSA
FT                   QEDGERDKEVNAGTSGTFSVPRLKSLASKMRVPKYEKKLALNLDHLILYTPEQTDLSNT
FT                   RSTQKQFNTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 298 A; 177 C; 219 G; 170 T; 0 other;

AB189007  Length: 864  December 7, 2004 09:05  Type: N  Check: 5637  ..

       1  gctaatgaaa cgctagatgc tggtctgaca gaagagcaaa aacaagcaga
      51  gaaagaaaga aaggagaggg agaaagcaga aaaggaacga gagaagcaga
     101  agcaattagc actcaagaag ggcaaaggct cagcacaaga ggacggagaa
     151  cgcgacaagg aagtcaatgc cggaacttct ggaactttca gcgtacctag
     201  gctcaagagc ctagcaagca aaatgcgagt gccaaaatac gagaaaaagt
     251  tagcccttaa ccttgatcac ttaattttat acacgccaga gcagacggac
     301  ttatcgaaca cacgctcaac acagaagcag ttcaacacat ggtttgaggg
     351  cgtaatggct gactatgaat tgacggaaga caaaatgcaa ataattctca
     401  atggtttgat ggtttggtgc attgagaacg gaacttcccc gaatataaac
     451  ggaatgtggg tgatgatgga tggtgatgat caggtggaat tcccgatcaa
     501  accgctcatc gatcacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgcaat ttaaccgaca tgagcttagc
     651  tcgttacgca tttgatttct atgaaatgac ttctaggact ccaatacgtg
     701  cgagagaagc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggtaacgtt ggtacaacgg tagagaacac
     801  ggaaagacac acgaccgagg acgttaatcg gaacatgcac aacttacttg
     851  gcgttaaggg gttg