Sequence of DPV Turnip mosaic virus

Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA8.

ACC No: AB189014

Dated: 2004-12-03 | Length: 864 | CRC: -964910506

                !!NA_SEQUENCE 1.0
ID   AB189014   standard; genomic RNA; VRL; 864 BP.
XX
AC   AB189014;
XX
SV   AB189014.1
XX
DT   27-AUG-2004 (Rel. 81, Created)
DT   03-DEC-2004 (Rel. 82, Last updated, Version 2)
XX
DE   Turnip mosaic virus gene for polyprotein, partial cds, isolate: ITA8.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-864
RA   Ohshima K.;
RT   ;
RL   Submitted (24-AUG-2004) to the EMBL/GenBank/DDBJ databases.
RL   Kazusato Ohshima, Saga University, Faculty of Agriculture, Laboratory of
RL   Plant Virology; 1-banchi, Honjo-machi, Saga, Saga, 840-8502, Japan
RL   (E-mail:ohshimak@cc.saga-u.ac.jp, Tel:81-952-28-8730)
XX
RN   [2]
RA   Tomimura K., Spak J., Katis N., Jenner C.E., Walsh J.A., Gibbs A.J.,
RA   Ohshima K.;
RT   "Comparisons of the genetic structure of populations of Turnip mosaic virus
RT   in West and East Eurasia";
RL   Virology 330:408-423(2004).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /db_xref="taxon:12230"
FT                   /mol_type="genomic RNA"
FT                   /organism="Turnip mosaic virus"
FT                   /isolate="ITA8"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /db_xref="GOA:Q689I2"
FT                   /db_xref="UniProt/TrEMBL:Q689I2"
FT                   /product="polyprotein"
FT                   /protein_id="BAD38833.1"
FT                   /translation="AGETLDAGLTDEQKQAEKERKERERAEKEREKQKQLALKKGKNAA
FT                   LEEGERDNEVNAGTSGTFSVPRLKSLTSKMRVPKFEKRVALNLDHLILYTPEQTDLSNT
FT                   RSTRRQFDTWFEGVMADYELTEDKMQIILNGLMVWCIENGTSPNINGMWVMMDGDDQVE
FT                   FPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDRPYMPRYGLQRNLTDMSLARYAFD
FT                   FYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDGNVGTTVENTERHTTEDVNRNMHN
FT                   LLGVKGL"
FT   mat_peptide     <1. .>864
FT                   /gene="CP"
FT                   /product="CP protein"
XX
SQ   Sequence 864 BP; 283 A; 182 C; 229 G; 170 T; 0 other;

 AB189014  Length: 864  December 7, 2004 09:05  Type: N  Check: 148  ..

       1  gcaggtgaaa cgcttgatgc aggcctgaca gatgagcaga aacaggcgga
      51  gaaggaaagg aaagagagag aaagagcaga aaaagagcga gagaagcaaa
     101  agcagcttgc gctcaagaaa ggcaaaaacg cagcactaga ggaaggcgag
     151  cgtgacaacg aggtgaatgc cggaacttcc ggaactttta gtgtgcctag
     201  acttaaaagc ctaactagca aaatgcgagt gcccaaattc gagaaaagag
     251  tagctctcaa tcttgaccac ctgatcctgt acacgccgga gcagacggat
     301  ctatccaata cgcgttcaac gcgaaggcag tttgacactt ggtttgaagg
     351  tgtcatggct gactatgagc taacggagga taaaatgcaa ataattctca
     401  atggtctaat ggtctggtgc attgagaatg gaacctcccc aaacataaac
     451  ggaatgtggg tgatgatgga cggcgatgat caggtggaat tcccgatcaa
     501  accgctcatt gaccacgcca aacccacatt taggcagata atggcccatt
     551  tcagtgacgt agctgaagcg tacattgaaa agcgtaacca agaccgacca
     601  tacatgccac gatatggtct tcagcgtaat ttaaccgaca tgagcttagc
     651  tcggtacgca tttgatttct atgaaatgac ttctagaact ccaatacgtg
     701  cgagagaggc acacatccag atgaaagcag cagcactgcg tggcgcaaat
     751  aataatttgt tcggcttgga tggtaacgtc ggcacaacgg tagagaacac
     801  ggaaaggcat acgaccgagg acgttaatcg gaacatgcat aacttacttg
     851  gcgttaaggg gtta