Sequence of DPV Leek yellow stripe virus

Leek yellow stripe virus gene for coat protein, partial cds, isolate: Okinawa#3.

ACC No: AB194632

Dated: 2011-12-08 | Length: 858 | CRC: -81203352

                
ID   AB194632; SV 1; linear; genomic RNA; STD; VRL; 858 BP.
XX
AC   AB194632;
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DT   07-JAN-2006 (Rel. 86, Created)
DT   08-DEC-2011 (Rel. 111, Last updated, Version 4)
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DE   Leek yellow stripe virus gene for coat protein, partial cds, isolate:
DE   Okinawa#3.
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KW   .
XX
OS   Leek yellow stripe virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-858
RA   Sano T.;
RT   ;
RL   Submitted (08-NOV-2004) to the INSDC.
RL   Contact:Teruo Sano Hirosaki University, Faculty of Agriculture and Life
RL   Science; Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan URL   
RL   :http://nature.cc.hirosaki-u.ac.jp/lab/3/plapath/
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RN   [2]
RA   Takaki F., Sano T., Yamashita K., Fujita T., Ueda K., Kato T.;
RT   "Complete nucleotide sequences of attenuated and severe isolates of Leek
RT   yellow stripe virus from garlic in northern Japan: Identification of three
RT   distinct virus types in garlic and leek world-wide";
RL   Arch. Virol. 150:1135-1149(2005).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .858
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Allium sativum"
FT                   /isolate="Okinawa#3"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Okinawa prefecture"
FT                   /note="synonym: Leek yellow stripe potyvirus"
FT                   /db_xref="taxon:42004"
FT   CDS             <1. .>858
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q2PH38"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q2PH38"
FT                   /protein_id="BAE72843.1"
FT                   /translation="AGEELDAGMSANKNHKSSADKGNEQRGPSTSQTGNQTGVGSSELS
FT                   TNKDRDVNVGTTGTFSVPRIKQIPQKWMAIPMEGGKSLLNLDHLLQYKPSQLCISNTRA
FT                   TRMQFNNWMERVQEEYGVTKSEMSIILNGLMVWCIENGTSPNINGVWTMMDGDEQVEYP
FT                   LRPIVEHAKPTLRQIMAHFSALAEAYIEMRNSEQAYMPRYGLQRNLTDMGLARYAFDFY
FT                   EVTSRTPVRAREAHAQMKAAALRSSRPRLFGPDGNVTTTDEDTERHTAHDVNARMHHLD
FT                   GAHMQ"
XX
SQ   Sequence 858 BP; 295 A; 177 C; 214 G; 172 T; 0 other;

ab194632 Length: 858  08-DEC-2011  Type: N  Check: 4472  ..

       1  gctggtgaag agttggatgc aggaatgtca gcaaacaaga accataaaag
      51  tagtgcggat aagggcaacg agcaacgagg cccatcaaca tcacaaactg
     101  gaaatcaaac cggtgtggga agttcggaat tgagcacaaa taaagatagg
     151  gatgtgaacg ttggtaccac aggaaccttt agcgtgccac gaataaaaca
     201  aataccacaa aagtggatgg caatccccat ggaaggggga aagtcgttac
     251  tcaacttaga tcacctgtta caatataaac caagtcaatt gtgcatatca
     301  aacactagag cgacgcgaat gcaattcaat aattggatgg aaagagtaca
     351  ggaggaatat ggtgttacaa agagtgaaat gagcatcatt ttgaacggtc
     401  taatggtttg gtgcattgaa aacggaacgt caccaaacat aaacggagta
     451  tggacgatga tggatggcga tgagcaggtt gaatatcctc tacgacctat
     501  cgtcgagcac gcaaaaccaa ctctacgtca aataatggcg catttctcag
     551  cacttgccga agcttatatt gagatgagga attcagaaca agcttacatg
     601  ccaagatatg gcctacaaag aaacttaaca gacatgggtc tcgcacgcta
     651  cgcatttgac ttttacgaag tcacgtcaag aacaccagtt agagcgcgtg
     701  aagctcatgc acaaatgaaa gcagcggcct tgcgtagttc aaggccaaga
     751  ctgtttggac cagacggcaa cgtcacaacc acggatgagg acacggagag
     801  gcacacagca catgacgtga atgcacgtat gcaccatctt gatggtgcgc
     851  atatgcag