Sequence of DPV Leek yellow stripe virus

Leek yellow stripe virus gene for coat protein, partial cds, isolate: Korea:Import.#2.

ACC No: AB194635

Dated: 2011-12-08 | Length: 864 | CRC: 633105461

                
ID   AB194635; SV 1; linear; genomic RNA; STD; VRL; 864 BP.
XX
AC   AB194635;
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DT   07-JAN-2006 (Rel. 86, Created)
DT   08-DEC-2011 (Rel. 111, Last updated, Version 4)
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DE   Leek yellow stripe virus gene for coat protein, partial cds, isolate:
DE   Korea:Import.#2.
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KW   .
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OS   Leek yellow stripe virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-864
RA   Sano T.;
RT   ;
RL   Submitted (08-NOV-2004) to the INSDC.
RL   Contact:Teruo Sano Hirosaki University, Faculty of Agriculture and Life
RL   Science; Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan URL   
RL   :http://nature.cc.hirosaki-u.ac.jp/lab/3/plapath/
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RN   [2]
RA   Takaki F., Sano T., Yamashita K., Fujita T., Ueda K., Kato T.;
RT   "Complete nucleotide sequences of attenuated and severe isolates of Leek
RT   yellow stripe virus from garlic in northern Japan: Identification of three
RT   distinct virus types in garlic and leek world-wide";
RL   Arch. Virol. 150:1135-1149(2005).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .864
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Allium sativum"
FT                   /isolate="Korea:Import.#2"
FT                   /mol_type="genomic RNA"
FT                   /country="South Korea"
FT                   /note="synonym: Leek yellow stripe potyvirus"
FT                   /db_xref="taxon:42004"
FT   CDS             <1. .>864
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q2PH35"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q2PH35"
FT                   /protein_id="BAE72846.1"
FT                   /translation="AGEEFDAGAQANKNQKSGADKAIEQRNPSVSQTSAHGKNDGSSSE
FT                   LSMGKDRDVNVGTTGTFSVPRIKQITQKGIAIPMDGNKSILNLDHLLQYKPSQLCISNT
FT                   RATRTQFMAWKARLQDEYGVTASEMSIILNGLMVWCIENGTSPNINGVWTMMDGEEQVE
FT                   FPLRPVVEHAQPTLRQIMAHFSALAEAYIEMRNAEQAYMPRYGLQRNLTDMSLARYAFD
FT                   FYEVTSRTPVRAREAHAQMKAAALRNSRPRLFGLDGNVTTMDEDTERHTAHDVNARMHH
FT                   LDGAHMQ"
XX
SQ   Sequence 864 BP; 292 A; 169 C; 221 G; 182 T; 0 other;

ab194635 Length: 864  08-DEC-2011  Type: N  Check: 5920  ..

       1  gcaggtgagg agttcgatgc gggagcacaa gcaaacaaga atcagaagag
      51  tggtgcagac aaggcaatag agcaacggaa cccatctgtc tcacaaacta
     101  gtgcacacgg gaagaatgat ggcagcagtt cagaactgag catgggaaaa
     151  gatagagatg tgaatgttgg taccacaggg acatttagtg tgccacgaat
     201  aaaacaaatt acacagaaag gcatagcaat tccaatggat gggaataaat
     251  ctatactcaa tttagaccac ctcctacaat ataaacctag tcagttatgc
     301  atatcaaaca caagggccac taggacgcaa tttatggctt ggaaagcaag
     351  gctgcaggat gaatatggtg tcactgcgag cgaaatgagt attatcttaa
     401  atggcttaat ggtgtggtgc atagaaaatg gcacttcacc aaacataaat
     451  ggtgtttgga caatgatgga tggtgaggaa caggttgaat ttcctttacg
     501  accagttgta gagcacgcac agccaacttt gcggcagatt atggcgcatt
     551  tctcagcact tgcagaagcc tacattgaga tgagaaatgc agagcaagca
     601  tatatgccaa gatatggatt acaaagaaat cttacagaca tgagtctcgc
     651  acggtacgca tttgactttt atgaagtcac atcaagaaca ccagttagag
     701  cgcgcgaggc tcacgcacaa atgaaagcag cagccttgag gaattcaagg
     751  ccaaggttgt ttggattgga cggtaacgtc acaactatgg atgaggacac
     801  ggagaggcac acagcacatg acgtgaacgc acggatgcac catctcgatg
     851  gtgcacatat gcag