Sequence of DPV Leek yellow stripe virus

Leek yellow stripe virus gene for coat protein, partial cds, isolate: Aomori.021.

ACC No: AB194636

Dated: 2011-12-08 | Length: 867 | CRC: -661699605

                
ID   AB194636; SV 1; linear; genomic RNA; STD; VRL; 867 BP.
XX
AC   AB194636;
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DT   07-JAN-2006 (Rel. 86, Created)
DT   08-DEC-2011 (Rel. 111, Last updated, Version 4)
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DE   Leek yellow stripe virus gene for coat protein, partial cds, isolate:
DE   Aomori.021.
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KW   .
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OS   Leek yellow stripe virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-867
RA   Sano T.;
RT   ;
RL   Submitted (08-NOV-2004) to the INSDC.
RL   Contact:Teruo Sano Hirosaki University, Faculty of Agriculture and Life
RL   Science; Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan URL   
RL   :http://nature.cc.hirosaki-u.ac.jp/lab/3/plapath/
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RN   [2]
RA   Takaki F., Sano T., Yamashita K., Fujita T., Ueda K., Kato T.;
RT   "Complete nucleotide sequences of attenuated and severe isolates of Leek
RT   yellow stripe virus from garlic in northern Japan: Identification of three
RT   distinct virus types in garlic and leek world-wide";
RL   Arch. Virol. 150:1135-1149(2005).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .867
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Allium sativum"
FT                   /isolate="Aomori.021"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Aomori prefecture"
FT                   /note="synonym: Leek yellow stripe potyvirus"
FT                   /db_xref="taxon:42004"
FT   CDS             <1. .>867
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q2PH34"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q2PH34"
FT                   /protein_id="BAE72847.1"
FT                   /translation="ANDELDAGMQTSKKQKDGNDKSIEQRDPASSQVSSLGKKDGEGGS
FT                   GMSRNKDRDVNVGTTGTFSVPRIKQIPQKGISIPMDGGKSILNLDHLLQYKPNQLNISN
FT                   TRATVAQFKTWMERVQEDYGVTKGEMGIILNGLMVWCIENGTSPNINGTWTMMDGDEQV
FT                   AYPLRPIVEHAKPTLRQIMAHFSALAEAYIEMRNSEQAYMPRYGLQRNLTDMSLARYAF
FT                   DFYEVTSRTPVRAREAHAQMKAAALRNSRPRLFGLDGNVTTTDEDTERHTAHDVNARMH
FT                   HLDGAHMQ"
XX
SQ   Sequence 867 BP; 299 A; 171 C; 217 G; 180 T; 0 other;

ab194636 Length: 867  08-DEC-2011  Type: N  Check: 5822  ..

       1  gctaacgatg aattagatgc aggcatgcaa acaagtaaga aacagaagga
      51  tggtaatgat aaatctattg aacaacgcga tccagcatca tcacaagtta
     101  gttcactagg caagaaagac ggtgaaggcg gttcaggaat gagtagaaac
     151  aaagacaggg atgtgaacgt tggcacaaca gggactttta gtgttccacg
     201  aatcaaacag ataccacaga aaggtatctc gataccaatg gacggaggaa
     251  agtcaatact caacttagac catttactac agtataaacc aaatcaattg
     301  aatatatcga acacaagagc cacagtggca caatttaaaa cctggatgga
     351  gagagtgcaa gaggattacg gtgtcactaa aggtgaaatg ggcataattc
     401  tgaatggttt gatggtgtgg tgcatcgaaa atggaacctc accaaatata
     451  aatgggactt ggactatgat ggatggcgat gagcaagtcg cgtacccttt
     501  acggccgatc gttgaacatg cgaaaccaac cttacggcaa ataatggcgc
     551  atttttcagc actcgcggag gcgtacattg aaatgagaaa ttcagagcag
     601  gcttatatgc caagatatgg attacaaaga aatcttacag acatgagcct
     651  cgcacggtat gcatttgatt tttatgaagt cacatcaaga acaccagtta
     701  gagcgcgcga ggctcacgca caaatgaaag cagcggccct gcgtaattca
     751  aggccaaggc tgtttggact agacggtaac gtcacaacca cggatgagga
     801  cacggagagg cacacagcac atgacgtgaa tgcacggatg caccatcttg
     851  atggtgcgca tatgcag