Sequence of DPV Leek yellow stripe virus

Leek yellow stripe virus gene for coat protein, partial cds, isolate: China:Import.991.

ACC No: AB194641

Dated: 2011-12-08 | Length: 867 | CRC: 1765456158

                
ID   AB194641; SV 1; linear; genomic RNA; STD; VRL; 867 BP.
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AC   AB194641;
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DT   07-JAN-2006 (Rel. 86, Created)
DT   08-DEC-2011 (Rel. 111, Last updated, Version 4)
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DE   Leek yellow stripe virus gene for coat protein, partial cds, isolate:
DE   China:Import.991.
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KW   .
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OS   Leek yellow stripe virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-867
RA   Sano T.;
RT   ;
RL   Submitted (08-NOV-2004) to the INSDC.
RL   Contact:Teruo Sano Hirosaki University, Faculty of Agriculture and Life
RL   Science; Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan URL   
RL   :http://nature.cc.hirosaki-u.ac.jp/lab/3/plapath/
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RN   [2]
RA   Takaki F., Sano T., Yamashita K., Fujita T., Ueda K., Kato T.;
RT   "Complete nucleotide sequences of attenuated and severe isolates of Leek
RT   yellow stripe virus from garlic in northern Japan: Identification of three
RT   distinct virus types in garlic and leek world-wide";
RL   Arch. Virol. 150:1135-1149(2005).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .867
FT                   /organism="Leek yellow stripe virus"
FT                   /host="Allium sativum"
FT                   /isolate="China:Import.991"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /note="synonym: Leek yellow stripe potyvirus"
FT                   /db_xref="taxon:42004"
FT   CDS             <1. .>867
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q2PH29"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q2PH29"
FT                   /protein_id="BAE72852.1"
FT                   /translation="AGDELDAGTQVNRSQKASTDKSIEQRNPLVSQTSTHGNKDASTSS
FT                   EASMGKDRDVNVGTTGTFSVPRIKQISRKGLAIPTDGGKSILNLDHLLQYKPSQLYISN
FT                   TRATRAQFASWRTRLQEEYGVTDGEMSIILNGLMVWCIENGTSPNINGVWTMMDGEEQV
FT                   EFPLRPVVEHAQPTLRQIMAHFSALAEAYIEMRNAEQAYMPRYGLQRNLTDLSLARYAF
FT                   DFYEVTSRTPVRAREAHAQMKAAALRNARPRLFGLDGNVTTTDEDTERHTAHDVNARMH
FT                   HLDGAHMQ"
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SQ   Sequence 867 BP; 298 A; 184 C; 212 G; 173 T; 0 other;

ab194641 Length: 867  08-DEC-2011  Type: N  Check: 4745  ..

       1  gcaggtgatg aactcgacgc agggacgcag gtgaatagaa gccaaaaagc
      51  tagcactgat aagtctatag aacaacgaaa cccattagta tcacaaacaa
     101  gtacacatgg aaataaagat gctagcacta gttcagaggc aagcatgggc
     151  aaagatagag atgtcaatgt tggcaccaca ggaacattta gtgtgccacg
     201  aataaagcaa atttcgagaa aaggtttagc gattccaacg gatggaggaa
     251  agtcaatact taacttagac cacctcttac aatataagcc tagtcaatta
     301  tacatatcaa acacgagagc caccagagcg caattcgcat cttggagaac
     351  aagactacag gaggaatatg gtgtcactga tggcgagatg agcattattc
     401  taaatggcct aatggtatgg tgtatcgaaa atgggacttc accaaatata
     451  aatggagttt ggacaatgat ggatggcgag gagcaagtcg agttcccttt
     501  acgaccagtt gtagaacacg cacaaccgac cttgcgacaa ataatggcgc
     551  atttctcagc acttgcagaa gcatatatcg agatgcgaaa tgcggaacaa
     601  gcttatatgc caagatatgg actacaaagg aatcttaccg acctgagtct
     651  cgcacggtac gcatttgact tttatgaagt cacatcaaga acaccagtta
     701  gagcgcgcga ggcccatgca caaatgaaag cagcagcctt acggaacgca
     751  aggccaaggc tgtttggact agacggtaac gtcacaacca cggatgagga
     801  cacggagagg cacacagcac atgacgtgaa tgcacggatg caccatctcg
     851  atggtgcgca tatgcag