Sequence of DPV Soybean mosaic virus

Soybean mosaic virus CP gene for coat protein, partial cds, isolate: Ok1.

ACC No: AB206830

Dated: 2008-06-21 | Length: 798 | CRC: 1765636977

                
ID   AB206830; SV 1; linear; genomic RNA; STD; VRL; 798 BP.
XX
AC   AB206830;
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DT   04-APR-2006 (Rel. 87, Created)
DT   21-JUN-2008 (Rel. 96, Last updated, Version 3)
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DE   Soybean mosaic virus CP gene for coat protein, partial cds, isolate: Ok1.
XX
KW   .
XX
OS   Soybean mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-798
RA   Sasaya T., Saruta M.;
RT   ;
RL   Submitted (11-MAR-2005) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Takahide Sasaya National Agricultural Research Center for Western
RL   Region, Laboratory of Plant Virology; 1-3-1 Senyu-cho, Zentsuji, Kagawa
RL   765-8508, Japan
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RN   [2]
RA   Saruta M., Kikuchi A., Okabe A., Sasaya T.;
RT   "Molecular characterization of A2 and D strains of Soybean mosaic virus,
RT   which caused a recent virus outbreak in soybean cultivar Sachiyutaka in
RT   Chugoku and Shikoku regions of Japan";
RL   J. Gen. Plant Pathol. 71:431-435(2006).
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FH   Key             Location/Qualifiers
FH
FT   source          1. .798
FT                   /organism="Soybean mosaic virus"
FT                   /strain="D"
FT                   /isolate="Ok1"
FT                   /mol_type="genomic RNA"
FT                   /country="Japan:Okayama"
FT                   /db_xref="taxon:12222"
FT   CDS             <1. .798
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q1XI31"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:Q1XI31"
FT                   /protein_id="BAE92868.1"
FT                   /translation="SGKEKEGDMDAGKDPKKNTSSNKGTGTSSKDVNVGSKGKVVPRLQ
FT                   KITRKMNLPMVEGKIILSLDHLLEYKPNQVDLFNTRATRTQFEAWYNAVKDEYELDDEQ
FT                   MGVVMNGFMVWCIDNGTSPDANGVWVMMDGEEQIEYPLKPIVENAKPTLRQIMHHFSDA
FT                   AEAYIEMRNSESPYMPRYGLLRNLRDRELARYAFDFYEVTSKTPNRAREAIAQMKAAAL
FT                   SGVNNKLFGLDGNISTNSENTERHTARDVNQNMHTLLGMGPQQ"
XX
SQ   Sequence 798 BP; 268 A; 139 C; 206 G; 185 T; 0 other;

ab206830 Length: 798  21-JUN-2008  Type: N  Check: 6238  ..

       1  tcaggcaagg aaaaggaagg agacatggat gcaggtaagg atccaaagaa
      51  gaacaccagc agtaacaaag gaactggtac aagcagcaaa gatgtaaatg
     101  ttggatcaaa aggaaaggtg gttccgcgtt tgcagaagat tacaagaaag
     151  atgaaccttc caatggttga ggggaagatt attcttagct tagatcactt
     201  gcttgagtac aaacctaatc aggttgattt attcaacact cgagcaacaa
     251  gaacacagtt tgaagcgtgg tacaatgcag ttaaggatga gtatgagctt
     301  gatgatgaac aaatgggggt ggtcatgaat ggttttatgg tttggtgtat
     351  tgacaatggc acatctccag atgccaatgg cgtgtgggtg atgatggatg
     401  gagaggaaca gattgaatat ccgctgaagc ccattgttga aaatgcaaaa
     451  ccaactttga gacaaatcat gcatcatttt tcagatgcag cagaagctta
     501  cattgagatg agaaattctg aaagtccgta tatgcctaga tatggactac
     551  tgaggaattt gagagacaga gaattggccc gctatgcttt tgatttctat
     601  gaggtcactt ccaaaacacc aaacagggca agggaagcaa tagcgcaaat
     651  gaaggctgca gctctctcgg gagttaacaa caagctgttt gggcttgatg
     701  gcaacatctc gaccaactcc gaaaatactg aaaggcacac tgcaagagat
     751  gtgaatcaga acatgcacac tcttttgggc atgggcccac agcagtaa