Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus genomic RNA, complete genome, isolate: Tottori.
ACC No: AB232925
Dated: 2011-05-17 | Length: 4261 | CRC: 908947721
ID AB232925; SV 1; linear; genomic RNA; STD; VRL; 4261 BP.
XX
AC AB232925;
XX
DT 19-MAR-2008 (Rel. 95, Created)
DT 17-MAY-2011 (Rel. 108, Last updated, Version 4)
XX
DE Melon necrotic spot virus genomic RNA, complete genome, isolate: Tottori.
XX
KW .
XX
OS Melon necrotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4261
RA Ohki T., Sako I., Takeuchi S., Tsuda S., Honda Y.;
RT ;
RL Submitted (25-AUG-2005) to the INSDC.
RL Contact:Takehiro Ohki National agricultural research center, Department of
RL Plant Pathology; Kan-nondai, Tsukuba, Ibaraki 305-8666, Japan
XX
RN [2]
RA Ohki T., Sako I., Kanda A., Mochizuki T., Honda Y., Tsuda S.;
RT "A New Strain of Melon necrotic spot virus that Is Unable to Systemically
RT Infect Cucumis melo";
RL Phytopathology 11:1165-1170(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4261
FT /organism="Melon necrotic spot virus"
FT /isolate="Tottori"
FT /mol_type="genomic RNA"
FT /isolation_source="watermelon"
FT /note="Melon necrotic spot virus watermelon strain Tottori
FT isolate"
FT /db_xref="taxon:11987"
FT CDS 94. .2469
FT /codon_start=1
FT /transl_table=1
FT /transl_except=(pos:898. .900,aa:OTHER)
FT /gene="p89"
FT /product="89K protein"
FT /note="Putative RNA-dependent RNA polymerase produced by a
FT readthrouth of the amber codon; replicase"
FT /db_xref="GOA:B1B1S7"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:B1B1S7"
FT /protein_id="BAG13029.1"
FT /translation="METGLKFLVSGGLATSSVFRKVNAESLLDSSRASSDIIATVHGSM
FT INAVRDDCAKVAKVALCVGVAYAVWKAGSLWVRRRPVLRNAIVRGGEEVMEHITVGIDE
FT DEDSDAEDREEIIVGSIGIGVSRNVSPERKLKRRHRSKPFIRKIVHLTKNHFGGCPESS
FT KSNVMAVSKFVYDLCKQHNCLPHQTRMIISVTVPLVLSPDMYDISSRALLNSETLNENR
FT AKLDRLKTLDGWLSNLICHPLSAKAWRRTIDNLCGLPDWKAFRLINXGCLEELAGFCTS
FT VHRGTHPDMTEYPQERPVKTRKLFCLGGVGTSVQFNVHNNSMRNLRRGLMERVFYVENE
FT KKELEPAPKPLDGVFGNLAWFRRKLHNIVGTHSCVSPGQFLDFYTGRRRTIYEGAVKSL
FT EGLGVQRRDAYLKTFVKAEKINTTRKPDPAPRVIQPRNVRYNVEVGRFLRRFEHYLYRG
FT IDEIWNGPTVIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSIPALQWEHSVY
FT LDAFCQDSYLAELLSWQLENKGVGYASDGMIRYKVDGCRMSGDMNTAMGNCLIACAITH
FT DFFRCRGIRARLLNNGDDCVVIVEKECAAEVKSGMVRHWRQFGFQCELECDADIFEQIE
FT FCQMRPVYDGEKYIMVRNPLISLSKDAYSVGPWNSINHARKWVNAVGLCGMSLTGGIPV
FT VQSYYNMFIRNTKTVNSSSILRDVSFASGFRELAKLGNRSYRNISEESRFSFYLAFGIT
FT PDLQRAMESDYDAHTIDWGFVPQGNPRIQPISWTLNAL"
FT CDS 94. .900
FT /codon_start=1
FT /transl_table=1
FT /gene="p29"
FT /product="29K protein"
FT /db_xref="UniProtKB/TrEMBL:B1B1S8"
FT /protein_id="BAG13030.1"
FT /translation="METGLKFLVSGGLATSSVFRKVNAESLLDSSRASSDIIATVHGSM
FT INAVRDDCAKVAKVALCVGVAYAVWKAGSLWVRRRPVLRNAIVRGGEEVMEHITVGIDE
FT DEDSDAEDREEIIVGSIGIGVSRNVSPERKLKRRHRSKPFIRKIVHLTKNHFGGCPESS
FT KSNVMAVSKFVYDLCKQHNCLPHQTRMIISVTVPLVLSPDMYDISSRALLNSETLNENR
FT AKLDRLKTLDGWLSNLICHPLSAKAWRRTIDNLCGLPDWKAFRLIN"
FT CDS 2448. .2645
FT /codon_start=1
FT /transl_table=1
FT /gene="p7A"
FT /product="p7A protein"
FT /db_xref="GOA:B1B1T0"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:B1B1T0"
FT /protein_id="BAG13032.1"
FT /translation="MDPQRTVEQQNPRGRSRDRDDSGGKQKNSMGRKIANDAITESKQG
FT VMGASVYIADKIKVNINFNF"
FT CDS 2649. .2834
FT /codon_start=1
FT /transl_table=1
FT /gene="p7B"
FT /product="p7B protein"
FT /db_xref="InterPro:IPR009575"
FT /db_xref="UniProtKB/TrEMBL:B1B1T1"
FT /protein_id="BAG13033.1"
FT /translation="MGCYRCDSGPGDYSGPLLILFLAFVFFYITSLGPHGNTYVHHFDN
FT SSVKTQYVGISTNGND"
FT CDS 2821. .3993
FT /codon_start=1
FT /transl_table=1
FT /gene="p42"
FT /product="capsid protein"
FT /db_xref="GOA:B1B1T2"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:B1B1T2"
FT /protein_id="BAG13034.1"
FT /translation="MAMIKRVNKLPTVQMAKQLLPLVPSAKLVNNAIDVVPLVVQGGKK
FT LSKAAKRLLGRYGGNITYTEGAKPGSVSAPVAISQRVAGMKPRFTQTAGSVKIVHRELI
FT TTVLPADSLTVNNGDTNTGKYRVNPSNNALFTWLQGQAQLYDMYRFTKLRFTYIPTTNT
FT TATGRVSVIWDKDSQDPLPQDRAAISSYAHYADSAPWAENYLVVPCDNVWRYMNDTNAV
FT DRKLVDVGQLIFATYSSVSSVPHGDLYVEYTVEFKEPQPISGMTCMFDRDVSLGPVGST
FT IRGSNYISDTNVVTSGGNVGVFLNVPGTYLVTLVINAVTVGGLTFPGNGRLIGSSLNVT
FT GGGATSLSFTVASTGVPNASAATFNVGSVVTPTRVRLTISRSSPETAYLA"
XX
SQ Sequence 4261 BP; 1099 A; 892 C; 1068 G; 1202 T; 0 other;
ab232925 Length: 4261 17-MAY-2011 Type: N Check: 2649 ..
1 cggaaatctc tagccgattc cccgtgctct gtgcccgtcc tggcaagtct
51 ttcaagatat tggcgaggtt aaccgtaata acgtaggcta gcaatggaaa
101 ctggattgaa atttctcgtc tctggaggtt tagccacctc ttctgttttt
151 cgcaaggtaa atgcagagag tttattggat tcgtcccgtg cttcatctga
201 cattatagcc actgtgcatg gatcaatgat taatgccgtt cgtgacgatt
251 gtgctaaagt ggccaaggtt gctctgtgtg ttggtgtggc ttacgcagtc
301 tggaaagctg gatccctttg ggttcgtcgt cgaccagtcc tacggaacgc
351 catagtgcgt ggtggagaag aagtcatgga gcatatcact gttggtattg
401 atgaagatga agatagtgat gctgaagata gagaggaaat tattgttgga
451 agcattggta tcggggtgag cagaaatgta tcccctgagc gcaaattgaa
501 acgtagacac cgatctaagc ctttcattcg gaaaatcgtc cacttaacga
551 aaaatcattt tggaggatgt cctgaatcta gcaaatcgaa tgtcatggct
601 gtgagtaagt ttgtgtatga cttgtgtaag cagcataatt gccttccgca
651 tcaaacgaga atgatcatca gcgttacagt tccattggtg ttgagtcccg
701 acatgtatga tatatccagt agagctctat tgaacagcga gactcttaac
751 gagaatagag ctaaactgga tcgcctcaaa acgttggatg gatggctctc
801 caatcttata tgccatccac taagcgctaa ggcgtggagg cggacaattg
851 acaatctatg cggtcttcct gattggaagg cctttaggtt gatcaactag
901 gggtgcctag aggaactcgc tgggttttgc acgtctgtgc atagagggac
951 acacccagac atgaccgagt atcctcagga acgtcccgtt aagacacgca
1001 aactgttttg tttaggggga gtaggaacaa gcgtgcagtt caatgtgcat
1051 aacaactcaa tgagaaatct tagaagaggt ctcatggaac gcgtatttta
1101 cgttgaaaat gagaagaaag agttggaacc tgcccctaaa ccccttgatg
1151 gtgtgtttgg taacctagct tggtttcgcc ggaaacttca taatattgtt
1201 ggcactcatt cctgtgtatc gccgggtcag ttcctggatt tttacactgg
1251 caggagacga accatatatg agggagccgt gaagtccttg gaagggctag
1301 gggtccaacg tagagatgca tatcttaaaa cgtttgtcaa agccgaaaag
1351 attaacacca caaggaaacc ggacccggct ccccgggtta tacaacctag
1401 gaatgttcgt tataatgttg aggttggtcg attcttgaga aggtttgagc
1451 attatctcta caggggaatt gatgaaattt ggaatggtcc tactgtgatt
1501 aaaggatata ctgttgagca aatcgggaaa atcgcccgtg atgcttggga
1551 ttcgttcgtg agtcccgtgg caatcgggtt tgacatgaag cgatttgacc
1601 aacatgtatc catacccgct ctccaatggg aacacagcgt atatcttgat
1651 gcgttctgtc aggatagtta tctcgcagag ttattatctt ggcagctcga
1701 gaataaggga gtgggctacg ctagtgatgg gatgataaga tacaaggttg
1751 atggttgtcg tatgagtggc gacatgaata ccgctatggg taattgccta
1801 atagcctgcg ctatcacgca tgactttttc cgttgtcggg gtatacgggc
1851 tcgtctgctt aataatggtg atgattgcgt cgtgatcgtc gagaaggaat
1901 gtgccgcaga ggttaaatct ggcatggtaa ggcactggcg acagttcggg
1951 ttccaatgtg agcttgaatg cgatgcagac atcttcgagc aaattgaatt
2001 ttgtcagatg agacccgtgt acgatgggga aaaatacatc atggtgcgca
2051 acccgctgat tagcttgtcc aaagatgcgt actctgtcgg cccttggaat
2101 agcattaacc acgcacgcaa atgggtcaac gctgttggcc tgtgtggcat
2151 gtccctaact ggtggtatac ctgttgtcca aagctattat aatatgttta
2201 tccgtaatac caaaactgtc aatagctcta gcatcctccg tgatgtaagc
2251 tttgccagtg ggtttaggga attagctaag ctgggaaaca ggtcatatag
2301 gaacatatct gaggagtctc gatttagctt ttatctcgca tttggcatta
2351 ctcctgactt gcaacgtgcc atggaaagtg actatgatgc tcataccatc
2401 gattggggct ttgtgcccca gggaaatccc agaatacagc caatctcatg
2451 gaccctcaac gcactgtaga acaacaaaat cctaggggca gaagtcgtga
2501 tcgtgatgac agcgggggaa aacaaaagaa ttcaatgggg cgaaagatag
2551 ccaatgacgc tatcacggaa tcgaagcagg gagtcatggg cgctagtgtc
2601 tacatagcgg ataaaatcaa agtcaatatt aactttaatt tctaagctat
2651 gggatgctat cgttgtgact ctggccccgg ggattactca ggtccactgc
2701 ttatactctt ccttgcattc gtcttctttt atattacctc gcttggcccg
2751 cacggtaata catacgttca tcatttcgat aactcttctg tcaaaactca
2801 atacgttggc atctctacaa atggcaatga ttaaacgcgt caacaagctt
2851 cccactgtcc agatggcaaa gcagcttctt ccgctggtgc catctgctaa
2901 actcgtgaat aacgctatag atgtggttcc actggttgtc caaggtggta
2951 agaagttatc taaagccgcc aagcgcttgc ttggcagata tggaggtaac
3001 attacttaca ctgagggtgc gaaacctggg tccgtttctg ctcccgttgc
3051 tattagtcag cgggttgccg gaatgaagcc caggtttacc caaacagctg
3101 gatctgtgaa gatagtgcat agggaattga ttaccaccgt tttacctgct
3151 gatagtctca ctgttaataa cggtgacact aacactggta agtatagagt
3201 gaatccctct aataatgctt tattcacctg gttacaggga caagcacaac
3251 tgtatgatat gtatagattc actaagctgc gatttacata tattccgact
3301 accaacacga ctgcgacagg ccgcgtttct gtcatttggg ataaggattc
3351 gcaagaccca ttgccccaag atagagccgc tattagcagt tatgctcact
3401 acgctgactc agccccttgg gctgagaatt atttggtggt cccatgcgat
3451 aatgtttgga ggtatatgaa tgacactaat gctgtggatc gcaagttggt
3501 tgatgttggt caactgattt ttgctactta ctccagtgtc agttctgtcc
3551 cccatggtga tctgtatgtt gaatatactg ttgaattcaa agaaccccaa
3601 cccatttcag gcatgacgtg catgtttgac cgtgacgtgt ctcttggtcc
3651 tgtcggttcg actattagag gatcaaatta cattagtgac accaacgttg
3701 tcacctctgg tggtaacgtt ggagtattct tgaacgtccc gggaacttat
3751 ttggttactc ttgttataaa tgccgtgact gttggtggtt taactttccc
3801 tggcaatggc agacttattg gctcatctct caatgttaca ggtggtggcg
3851 ccacttctct ttcatttacg gttgcaagta cgggtgttcc taacgcttca
3901 gctgcaactt ttaatgttgg gtctgtggtc acgccaactc gagttcgttt
3951 gactatatcc aggtcatcac ctgaaactgc ctatttagct tagaatactt
4001 ccaaatttat ggatccttca tctagatcgt gttctctgga actgcatctg
4051 cttttagttc ttgactcttc tcaaattgtg tagaatggac tggctaacca
4101 ttacggcgta taagagagaa gggaatgatt gactaagggt gcacgaggcg
4151 tcagaagatc gaactggagt ggggttaacg ccatctgcaa atacactctg
4201 tgtggggcgg cagatggata gtcatgttac gattgaggag acttatcggg
4251 tctccccgcc c