Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus genomic RNA, complete genome, isolate: Kochi.
ACC No: AB232926
Dated: 2011-05-17 | Length: 4261 | CRC: 672388898
ID AB232926; SV 1; linear; genomic RNA; STD; VRL; 4261 BP.
XX
AC AB232926;
XX
DT 19-MAR-2008 (Rel. 95, Created)
DT 17-MAY-2011 (Rel. 108, Last updated, Version 4)
XX
DE Melon necrotic spot virus genomic RNA, complete genome, isolate: Kochi.
XX
KW .
XX
OS Melon necrotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4261
RA Ohki T., Sako I., Takeuchi S., Tsuda S., Honda Y.;
RT ;
RL Submitted (25-AUG-2005) to the INSDC.
RL Contact:Takehiro Ohki National agricultural research center, Department of
RL Plant Pathology; Kan-nondai, Tsukuba, Ibaraki 305-8666, Japan
XX
RN [2]
RA Ohki T., Sako I., Kanda A., Mochizuki T., Honda Y., Tsuda S.;
RT "A New Strain of Melon necrotic spot virus that Is Unable to Systemically
RT Infect Cucumis melo";
RL Phytopathology 11:1165-1170(2008).
XX
FH Key Location/Qualifiers
FH
FT source 1. .4261
FT /organism="Melon necrotic spot virus"
FT /isolate="Kochi"
FT /mol_type="genomic RNA"
FT /isolation_source="watermelon"
FT /note="Melon necrotic spot virus watermelon strain Kochi
FT isolate"
FT /db_xref="taxon:11987"
FT CDS 94. .2469
FT /codon_start=1
FT /transl_table=1
FT /transl_except=(pos:898. .900,aa:OTHER)
FT /gene="p89"
FT /product="89K protein"
FT /note="Putative RNA-dependent RNA polymerase produced by a
FT readthrouth of the amber codon; replicase"
FT /db_xref="GOA:B1B1T3"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:B1B1T3"
FT /protein_id="BAG13035.1"
FT /translation="METGLKFLVSGGLATSSVFRKVNAESLLDSSRASSDIIATVHGSM
FT INAVRDDCAKVAKVALCVGMAYAVWKAGSLWVRRRPVLRNAIVRGGEEVMEHITVGIDE
FT DEDSDAEDREEIIVGSIGIGVSRNVSPERKLKRRHRSKPFIRKIVHLTKNHFGGCPESS
FT KSNVMAVSKFVYDLCKQHNCLPHQTRMIISVAVPLVLSPDMYDISSRALLNSETLNENR
FT AKLDRLKTLDGWLSNLICHPLSAKAWRRTIDNLCGLPDWKAFRLINXGCLEELAGFCTS
FT VHRGTHPDMTEYPQERPVKTRKLFCLGGVGTSVQFNVHNNSMRNLRRGLMERVFYVENE
FT KKELEPAPKPLDGVFGNLAWFRRKLHNIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL
FT EGLGVQRRDAYLKTFVKAEKINTTRKPDPAPRVIQPRNVRYNVEVGRFLRRFEHYLYRG
FT IDEIWNGPTVIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSIPALQWEHSVY
FT LDAFCQDSYLAELLSWQLENKGVGYASDGMIRYKVDGCRMSGDMNTAMGNCLIACAITH
FT DFFRRRGMRARLLNNGDDCVVIVEKECAAEVKSGMVRHWRQFGFQCELECDADIFEQIE
FT FCQMRPVYDGEKYVMVRNPLISLSKDAYSVGPWNSINHARKWVNAVGLCGMSLTGGIPV
FT VQSYYNMFIRNTKTVNSSSILRDVSFASGFRELARLGNRSYRNISEESRFSFYLAFGIT
FT PDLQRAMESDYDAHTIDWGFVPQGNPRIQPISWTLNAL"
FT CDS 94. .900
FT /codon_start=1
FT /transl_table=1
FT /gene="p29"
FT /product="29K protein"
FT /db_xref="UniProtKB/TrEMBL:B1B1T4"
FT /protein_id="BAG13036.1"
FT /translation="METGLKFLVSGGLATSSVFRKVNAESLLDSSRASSDIIATVHGSM
FT INAVRDDCAKVAKVALCVGMAYAVWKAGSLWVRRRPVLRNAIVRGGEEVMEHITVGIDE
FT DEDSDAEDREEIIVGSIGIGVSRNVSPERKLKRRHRSKPFIRKIVHLTKNHFGGCPESS
FT KSNVMAVSKFVYDLCKQHNCLPHQTRMIISVAVPLVLSPDMYDISSRALLNSETLNENR
FT AKLDRLKTLDGWLSNLICHPLSAKAWRRTIDNLCGLPDWKAFRLIN"
FT CDS 2448. .2645
FT /codon_start=1
FT /transl_table=1
FT /gene="p7A"
FT /product="p7A protein"
FT /db_xref="GOA:B1B1T6"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:B1B1T6"
FT /protein_id="BAG13038.1"
FT /translation="MDSQRTVEQQNPRGRSRDRDDGGGKQKNSMGRKIANDAITESKQG
FT VMGASVYIADKIKVNISFNF"
FT CDS 2649. .2834
FT /codon_start=1
FT /transl_table=1
FT /gene="p7B"
FT /product="p7B protein"
FT /db_xref="InterPro:IPR009575"
FT /db_xref="UniProtKB/TrEMBL:B1B1T7"
FT /protein_id="BAG13039.1"
FT /translation="MGCYRCDSGPGDYSGPLLILFLAFVFFYITSLGPHGNTYVHLSDN
FT SSVKTQYVGISTNGND"
FT CDS 2821. .3993
FT /codon_start=1
FT /transl_table=1
FT /gene="p42"
FT /product="capsid protein"
FT /db_xref="GOA:B1B1T8"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProtKB/TrEMBL:B1B1T8"
FT /protein_id="BAG13040.1"
FT /translation="MAMIKRVNKLPTVQMAKQLLPLVPSAKLVNNAIDVVPLVVQGGKK
FT LSKAAKRLLGRYGGNITYTEGAKPGSVSAPVAISQRVAGMKPRFTQTAGSVKIVHRELI
FT TTILPADSLTVNNGDTNTGKYRVNPSNNALFTWLQGQAQLYDMYRFTKLRFTYIPTTNT
FT TATGRVSVIWDKDSQDPLPQDRAAISSYAHYADSAPWAENYLVVPCDNVWRYMNDTNAV
FT DRKLVDFGQLIFATYSSVSSVPHGDLYVEYTVEFKEPQPISGMTCMFDRDVSLGPVGST
FT IRGSNYISDTNVVTSGGNVGVFLNVPGTYLVTLVINAVTVGGLTFPGNGKLIGSSLNVT
FT GGGATSLSFTVASTGVPNASAATFNVGSVVTPTRVRLTISRSSPETAYLA"
XX
SQ Sequence 4261 BP; 1089 A; 901 C; 1075 G; 1196 T; 0 other;
ab232926 Length: 4261 17-MAY-2011 Type: N Check: 9495 ..
1 cggaaatctc tagccgattc cccgtgctct gtgcccgtcc tggcaagtct
51 ttcgagatat tggcgaggtt aaccgtaata acgtaggcta gcaatggaaa
101 ctggattgaa atttctcgtc tctggaggtt tagccacctc ttctgttttt
151 cgcaaggtaa atgcagagag tttattggat tcgtcccgtg cttcatctga
201 cattatagcc actgtgcatg gatcaatgat taatgccgtt cgtgacgatt
251 gtgctaaagt ggccaaggtt gctctgtgcg ttggtatggc ttacgcagtc
301 tggaaagctg gatccctttg ggttcgtcgt cgaccagtcc tgcggaacgc
351 catagtgcgc ggtggagaag aagtcatgga gcatatcact gttggtattg
401 atgaagatga ggatagtgat gctgaagata gagaggaaat tattgttgga
451 agcattggta tcggagtgag cagaaatgtc tcccctgagc gcaaattgaa
501 acgtagacac cgatcaaagc ctttcattcg gaaaatcgtc cacttaacga
551 aaaatcattt tggaggatgt cctgagtcta gcaaatcgaa tgtcatggca
601 gtgagtaagt ttgtgtatga cttgtgtaag cagcataatt gccttccgca
651 tcaaacgaga atgatcatca gcgttgcagt tccattggtg ttgagtcccg
701 acatgtatga tatatctagt agagctctat tgaacagcga gactcttaac
751 gagaatagag ctaaactgga tcgcctcaaa acgttggatg gatggctctc
801 caatcttata tgccatccac tgagcgctaa ggcttggagg cggacaattg
851 acaatctatg tggtcttcct gattggaagg cctttaggtt gatcaactag
901 gggtgcctag aggagctcgc tgggttttgc acatctgtgc acagagggac
951 acacccagac atgaccgagt atcctcagga acgtcccgtt aagacacgta
1001 aactgttttg tttaggggga gtaggaacga gcgtgcagtt caatgtgcat
1051 aacaactcaa tgagaaatct tagaagaggt ctcatggaac gcgtatttta
1101 cgttgaaaat gagaagaaag agttggaacc tgcccctaaa ccccttgacg
1151 gtgtgtttgg taacctagct tggtttcgtc ggaaacttca taatattgtt
1201 ggtactcatt ccagtatatc gccgggtcaa ttcctggatt tttacactgg
1251 caggaggcga accatatatg agggagccgt gaagtccttg gaagggctag
1301 gggtccaacg tagagatgca tatcttaaga catttgttaa agctgaaaag
1351 attaacacca caaggaaacc ggacccggct ccccgggtta tacaacctag
1401 gaatgttcgt tacaacgttg aggttggtcg attcttgaga aggtttgagc
1451 attatctcta taggggaatt gatgaaattt ggaatggtcc tactgtgatt
1501 aaaggatata ctgttgagca aatcgggaaa atcgcccgcg atgcttggga
1551 ttcattcgtg agtcccgtgg caatcgggtt tgacatgaag cgatttgacc
1601 aacatgtatc catacctgct ctccaatggg aacacagcgt atatcttgat
1651 gcgttctgtc aggacagtta tctcgcagag ttattgtctt ggcagctcga
1701 gaataaggga gtgggctacg ctagtgatgg gatgataaga tataaggttg
1751 atggttgtcg tatgagtggc gacatgaata ccgctatggg taattgtcta
1801 atagcttgcg ctatcacgca tgactttttc cgtcgtcggg gtatgcgggc
1851 tcgtctgctt aataatggtg atgactgcgt cgtgatcgtc gagaaggaat
1901 gtgccgcaga ggttaaatct ggcatggtaa ggcactggcg acagttcggg
1951 ttccaatgcg agcttgaatg cgatgctgac atcttcgagc aaattgaatt
2001 ttgtcagatg agacccgtgt acgatgggga aaaatacgtc atggtgcgca
2051 acccgctaat tagcttgtcc aaagatgcgt actctgtcgg cccttggaat
2101 agcattaacc acgcacgcaa atgggtcaac gctgttggcc tgtgtggcat
2151 gtccctgact ggtggtatac ctgttgtcca aagctattat aatatgttta
2201 tccgtaatac caaaactgtc aatagttcca gcatccttcg tgatgtaagc
2251 tttgccagtg ggtttaggga attagcaagg ttgggaaaca ggtcatatag
2301 gaacatatct gaggagtcac gatttagctt ttatctcgca tttggcatta
2351 ctcctgactt gcaacgtgcc atggaaagtg actatgatgc tcataccatc
2401 gattggggct ttgtgcccca gggaaatccc agaatacaac caatctcatg
2451 gactctcaac gcactgtaga acaacaaaat cctaggggca gaagtcgtga
2501 tcgagatgac ggcgggggaa aacaaaagaa ttcaatgggg cgaaagatag
2551 ccaatgacgc tatcacggaa tcgaagcagg gagtcatggg cgctagtgtc
2601 tacatagcag ataaaattaa agtcaatatt agcttcaatt tctaagctat
2651 gggatgctat cgttgtgact ctggccccgg ggattactct ggtccactgc
2701 ttatactctt ccttgcattc gtcttctttt atattacctc gcttggcccg
2751 cacggtaata catacgttca tctttccgat aactcttctg tcaagaccca
2801 atacgttggc atctctacaa atggcaatga ttaaacgcgt caataagctt
2851 cccactgtcc agatggcaaa gcagcttctt ccgctggtgc catctgctaa
2901 actcgtgaat aacgctatag atgtggttcc actggttgtc caaggtggta
2951 agaagttatc taaagccgcc aagcgcttgc ttggcaggta tggaggtaac
3001 attacttaca ctgagggtgc gaaacctggg tccgtttccg ctcccgttgc
3051 tattagtcag cgggttgccg gtatgaagcc caggtttacc caaacagctg
3101 gatctgtgaa gatagtgcat agggaattga ttaccactat cttgcctgct
3151 gatagtctca ctgttaacaa tggtgacact aacactggta agtatagagt
3201 gaatccctct aataatgctt tattcacctg gttacaggga caagcccaac
3251 tgtatgatat gtatagattc actaagttgc gatttacata cattccgact
3301 accaacacga ctgcgacagg ccgcgtatct gtcatttggg ataaggattc
3351 gcaagacccc ttgccccaag atagagccgc tattagcagt tatgctcact
3401 acgctgactc agccccttgg gctgaaaatt atttggtggt cccatgcgat
3451 aatgtttgga ggtatatgaa tgacactaat gctgtggatc gcaagttggt
3501 tgattttggt caactgattt tcgctactta ctctagtgtc agttctgtcc
3551 cccatggtga tctgtacgtt gaatacactg ttgaattcaa agaaccccaa
3601 cccatttcag gcatgacgtg catgtttgac cgtgacgtgt ctcttggtcc
3651 tgtcggatcg actattagag gatcaaatta cattagcgac accaacgttg
3701 tcacctctgg tggtaacgta ggagtattcc tgaacgtccc gggcacttat
3751 ttggttactc ttgttataaa tgccgtgact gttggtggtt taactttccc
3801 tggcaatggc aaacttatcg gctcatctct caatgttaca ggtggtggcg
3851 ccacttctct ttcatttacg gttgcaagta cgggtgttcc taacgcttca
3901 gctgcaactt ttaatgttgg gtctgtggtc acgccgactc gagttcgttt
3951 gactatatca aggtcatcac ctgaaactgc ctatttagct tagaatactt
4001 ccacttttaa ggacccttcc tttagatcgt gttctctgga actgcatctg
4051 cttttagttc ttgactcttc tcaaattgtg tagaatggac tggctaacca
4101 ttacggcgta taagagagaa gggtgtgata gactaagggt gcacgaggcg
4151 ccagaagatc gatctggagt ggggttaacg ccatctgcaa atacactctg
4201 tgtggggcgg cagatggata gtcatgttac gattgaggag acttatcggg
4251 tctccccgcc c